Factsheet for TraesCS3A01G232300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G220900.1	Wheat	golgi	99.53	99.53
TraesCS3B01G261500.1	Wheat	cytosol	99.29	99.29
HORVU3Hr1G057890.1	Barley	cytosol	98.34	98.34
HORVU3Hr1G057880.1	Barley	cytosol	98.34	98.34
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	94.07	94.07
GSMUA_Achr10P...	Banana	cytosol	85.53	93.51
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	93.48	93.48
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	93.24	93.24
KRH43759	Soybean	nucleus	93.12	93.12
Solyc08g062920.2.1	Tomato	nucleus, plastid	91.46	93.12
KRH13696	Soybean	nucleus	93.0	93.0
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	84.93	92.99
CDY49975	Canola	cytosol	43.89	92.73
VIT_19s0027g00760.t01	Wine grape	cytosol	93.36	92.26
CDX90241	Canola	cytosol, extracellular	86.36	92.04
Bra010782.1-P	Field mustard	cytosol	91.58	91.58
AT1G56070.2	Thale cress	cytosol	91.34	91.34
CDY05533	Canola	cytosol	70.7	91.27
TraesCS2A01G234500.1	Wheat	cytosol	13.52	91.2
TraesCS7A01G288600.1	Wheat	cytosol	13.17	90.98
CDY32072	Canola	cytosol	69.75	90.88
CDY70516	Canola	cytosol	54.69	90.57
GSMUA_Achr4P01020_001	Banana	cytosol	93.12	90.33
Bra010781.1-P	Field mustard	cytosol	58.96	90.04
TraesCS4A01G363900.1	Wheat	plastid	70.11	89.95
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	13.29	89.6
AT3G12915.2	Thale cress	cytosol	82.8	88.58
CDY40423	Canola	cytosol	82.09	87.93
CDY24982	Canola	endoplasmic reticulum, vacuole	87.31	87.83
Bra017279.1-P	Field mustard	cytosol	91.34	87.7
CDY70526	Canola	nucleus	8.78	87.06
CDY49974	Canola	nucleus	8.78	87.06
Bra020542.1-P	Field mustard	cytosol	91.46	81.59
KRH43761	Soybean	cytosol, nucleus, plastid	18.51	78.0
KRH13693	Soybean	mitochondrion	74.97	76.42
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	39.38	75.8
KRH13692	Soybean	cytosol, mitochondrion	60.38	71.19
CDY54261	Canola	nucleus	17.79	65.22
TraesCS1A01G027600.1	Wheat	cytosol	61.45	61.3
TraesCS7A01G380300.1	Wheat	nucleus	37.84	32.09
TraesCS5A01G370800.1	Wheat	cytosol	34.05	27.46
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	30.84	26.26
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	21.12	23.18
TraesCS7A01G336600.4	Wheat	mitochondrion	18.74	20.26
TraesCS3A01G291600.1	Wheat	mitochondrion	15.9	19.91
TraesCS7A01G087200.1	Wheat	mitochondrion	15.3	19.37
TraesCS4A01G386100.3	Wheat	mitochondrion	15.3	19.37
TraesCS6A01G130900.1	Wheat	plastid	15.07	18.96
TraesCS6A01G192800.1	Wheat	plastid	14.95	18.69

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS3A01G232300	EnsemblPlants:TraesCS3A01G232300.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	TIGR:cd01681	TIGR:cd01885
TIGR:cd04096	TIGR:cd16261	TIGR:cd16268	:	:	:

Description

No Description!

Coordinates

chr3A:+:433995257..434000425

Molecular Weight (calculated)

93800.6 Da

IEP (calculated)

5.901

GRAVY (calculated)

-0.195

Length

843 amino acids

Sequence
(BLAST)

001: MVKFTVEGLR IIMDKQNNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLFYE MTDESLRSYK GERDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDAKLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVDETKM MERLWGENFF DTATKKWTNK NTGSPTCKRG FVQFCYDPIK QIINTCMNDQ KDKLWPMLQK
301: LGVTMKADEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPSKAQKYR VENLYEGPLD DVYATAIRNC DPEGPLMLYV SKMIPASDKG RFFAFGRVFS
401: GRIATGMKVR IMGPNYVPGQ KKDLYVKSVQ RTVIWMGKKQ ESVDDVPCGN TVAMVGLDQF ITKNATLTNE KEVDACPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC SMEESGEHII AGAGELHLEI CLKDLQEDFM GGAEIIISPP VVSFRETVLE KSCRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGCIGPR DDPKVRSKVL SEEFGWDKDL AKKIWCFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGALAEE NMRGICFEVC DVVLHTDAIH
701: RGGGQVIPTA RRVIYASQLT AKPRLLEPVY LVEIQAPENA LGGIYGVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVIESFG FSGTLRAATS GQAFPQCVFD
801: HWDMMSADPL EAGSQAAQLV LDIRKRKGLK EQMTPLSEFE DKL

Best Arabidopsis Sequence Match ( AT3G12915.2 )
(BLAST)

001: MVKFTVEEQR KITDRKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQET AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDASLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQSLGER IRPVLTVNKM DRCFLELKVD GEEAYQNFQR VIENANVIMA THEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVSESKM MERLWGENFF DSATRKWTTK NWLPDLQAWK DKLWPMLEKL GIQMKPDEKE LMGKPLMKRV
301: MQAWLPASTA LLEMMIFHLP SPYTAQRYRV ENLYEGPLDD KYAAAIRNCD PDGPLMLYVS KMIPASDKGR FFAFGRVFSG TVSTGMKVRI MGPNYVPGEK
401: KDLYVKSVQR TVIWMGKKQE TVEDVPCGNT VAMVGLDQFI TKNASDLPKL VEGLKRLAKS DPMVLCTMEE SGEHIVAGAG ELHIEICVKD LQDFMGGADI
501: IVSDPVVSLR ETVFERSCRT VMSKSPNKHN RLYMEARPME DGLAEAIDEG RIGPSDDPKI RSKILAEEFG WDKDLAKKIW AFGPDTTGPN MVVDMCKGVQ
601: YLNEIKDSVV AGFQWASKEG PLAEENMRGV CYEVCDVVLH ADAIHRGCGQ MISTARRAIY ASQLTAKPRL LEPVYMVEIQ APEGALGGIY SVLNQKRGHV
701: FEEMQRPGTP LYNIKAYLPV VESFGFSGQL RAATSGQAFP QCVFDHWDMM SSDPLETGSQ AATLVADIRK RKGLKLQMTP LSDYEDKL

Arabidopsis Description

Ribosomal protein S5/Elongation factor G/III/V family protein [Source:UniProtKB/TrEMBL;Acc:F4JB06]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.