Factsheet for Bra020542.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05533	Canola	cytosol	68.89	99.69
Bra010782.1-P	Field mustard	cytosol	88.78	99.53
Bra010781.1-P	Field mustard	cytosol	58.1	99.46
CDY24982	Canola	endoplasmic reticulum, vacuole	86.67	97.73
AT1G56070.2	Thale cress	cytosol	86.03	96.44
Bra017279.1-P	Field mustard	cytosol	88.89	95.67
KRH13696	Soybean	nucleus	83.81	93.95
KRH43759	Soybean	nucleus	83.49	93.59
Solyc08g062920.2.1	Tomato	nucleus, plastid	81.9	93.48
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	75.98	93.25
VIT_19s0027g00760.t01	Wine grape	cytosol	83.49	92.5
GSMUA_Achr10P...	Banana	cytosol	75.34	92.35
KXG37185	Sorghum	cytosol	82.12	92.05
KXG37183	Sorghum	cytosol	82.12	92.05
Zm00001d012770_P001	Maize	plastid	82.01	91.93
Zm00001d034773_P001	Maize	cytosol	82.01	91.93
Zm00001d034776_P001	Maize	cytosol	82.01	91.93
AT3G12915.2	Thale cress	cytosol	76.61	91.88
EES01455	Sorghum	cytosol	81.9	91.81
Zm00001d034771_P002	Maize	cytosol	81.8	91.7
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	81.69	91.58
TraesCS3A01G232300.1	Wheat	cytosol, golgi	81.59	91.46
OQU75622	Sorghum	cytosol	32.8	91.45
TraesCS5D01G509700.1	Wheat	cytosol	79.79	91.39
TraesCS5D01G509600.1	Wheat	cytosol	81.48	91.34
TraesCS3D01G220900.1	Wheat	golgi	81.48	91.34
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	81.48	91.34
TraesCS5B01G509600.1	Wheat	cytosol, golgi	81.48	91.34
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	81.48	91.34
TraesCS3B01G261500.1	Wheat	cytosol	81.38	91.22
TraesCS7D01G449300.1	Wheat	cytosol	81.27	91.1
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	81.16	90.98
HORVU7Hr1G106150.1	Barley	cytosol	81.16	90.98
TraesCS7B01G362600.1	Wheat	cytosol	81.16	90.98
HORVU3Hr1G057890.1	Barley	cytosol	81.16	90.98
HORVU3Hr1G057880.1	Barley	cytosol	81.16	90.98
TraesCS5B01G509700.1	Wheat	cytosol, golgi	81.06	90.87
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	81.06	90.87
TraesCS5D01G509800.1	Wheat	cytosol	42.54	89.93
GSMUA_Achr4P01020_001	Banana	cytosol	82.33	89.53
Os01t0742200-01	Rice	cytosol, nucleus	76.93	88.01
TraesCS4A01G363900.1	Wheat	plastid	60.85	87.52
TraesCS2A01G234500.1	Wheat	cytosol	11.43	86.4
TraesCS7A01G288600.1	Wheat	cytosol	11.11	86.07
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	11.32	85.6
HORVU5Hr1G116710.1	Barley	cytosol	52.8	85.01
KRH43761	Soybean	cytosol, nucleus, plastid	16.51	78.0
KRH13693	Soybean	mitochondrion	66.98	76.54
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	35.03	75.57
KRH13692	Soybean	cytosol, mitochondrion	54.81	72.45
Zm00001d020342_P001	Maize	mitochondrion	30.26	71.68
TraesCS1D01G023700.1	Wheat	cytosol	54.5	61.24
TraesCS1A01G027600.1	Wheat	cytosol	52.8	59.05
TraesCS1D01G026800.1	Wheat	cytosol	43.17	58.62
TraesCSU01G002600.1	Wheat	cytosol	52.59	57.59
TraesCS1B01G033500.1	Wheat	cytosol	23.07	54.09
HORVU1Hr1G003960.9	Barley	cytosol	51.22	52.49
Os05t0467501-00	Rice	cytosol	24.13	50.0
Bra024798.1-P	Field mustard	cytosol	35.56	34.15
Bra030642.1-P	Field mustard	cytosol	35.66	34.14
Bra033543.1-P	Field mustard	cytosol	27.83	28.9
Bra033895.1-P	Field mustard	cytosol, nucleus, plastid	13.65	26.82
Bra027021.1-P	Field mustard	plastid	18.94	23.1
Bra004884.1-P	Field mustard	plastid	17.25	21.59
Bra022824.1-P	Field mustard	mitochondrion	14.07	21.08
Bra021694.1-P	Field mustard	mitochondrion	14.18	20.55
Bra028444.1-P	Field mustard	mitochondrion	13.44	19.21
Bra028651.1-P	Field mustard	plastid	13.33	18.42
Bra008811.1-P	Field mustard	plastid	13.12	18.4

Protein Annotations

Gene3D:1.10.510.10	MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870
Gene3D:3.40.50.300	Gene3D:3.90.1430.10	EnsemblPlantsGene:Bra020542	EnsemblPlants:Bra020542.1	EnsemblPlants:Bra020542.1-P	InterPro:EFG_III/V
InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005525	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0016787
GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000719	InterPro:IPR000795	InterPro:IPR014721	InterPro:Kinase-like_dom_sf
UniProt:M4DVJ8	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764
PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS50011	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF11	InterPro:Prot_kinase_dom	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889
SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	SUPFAM:SSF56112	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI0002546C93	:

Description

AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding

Coordinates

chrA02:+:24679511..24685427

Molecular Weight (calculated)

105636.0 Da

IEP (calculated)

6.477

GRAVY (calculated)

-0.222

Length

945 amino acids

Sequence
(BLAST)

001: MEGDEHSTAP LRIPDQIFAV GHEPVGVRAS KGRLKEDRER IYFQQLINAV DYCHSRWVYH RDVKINLSLL TRVLCFGSLV NESIGIVIQY ISYGVYKSEF
101: VKMVKFTSDE LRRIMDYKHN IRNMSVIAHV DHGKSTLTDS LVAAAGIIAQ EVAGDVRMTD TRADEAERGI TIKSTGISLY YEMTDASLKS FTGARDGNEY
201: LINLIDSPGH VDFSSEVTAA LRITDGALVV VDCIEGVCVQ TETVLRQALG ERIRPVLTVN KMDRCFLELQ VDGEEAYQTF QRVIENANVI MATYEDPLLG
301: DVQVSPEKGT VAFSAGLHGW AFTLTNFAKM YASKFGVDET KMMERLWGEN FFDPATRKWS GKNTGSATCK RGFVQFCYEP IKQIIATCMN DQKDKLWPML
401: QKLGVQMKSD EKELMGKPLM KRVMQTWLPA STALLEMMIF HLPSPHTAQR YRVENLYEGP LDDQYATAIR NCDPNGPLML YVSKMIPASD KGRFFAFGRV
501: FSGKVSTGMK VRIMGPNFVP GEKKDLYVKS VQRTVIWMGK RQETVEDVPC GNTVAMVGLD QFITKNATLT NEKEVDAHPI RAMKFSVSPV VRVAVQCKVA
601: SDLPKLVEGL KRLAKSDPMV VCTMEESGEH IVAGAGELHL EICLKDLQDD FMGGAEIVKS DPVVSFRETV LERSVRTVMS KSPNKHNRLY MEARPLEDGL
701: AEAIDDGRIG PRDDPKIRSK ILAEEFGWDK DLAKKIWAFG PETTGPNMVV DMCKGVQYLN EIKDSVVAGF QWASKEGPLC DENMRGICFE VCDVVLHSDA
801: IHRGGGQVIP TARRVIYASQ LTAKPRLLEP VYMVEIQAPE GALGGIYSVL NQKRGHVFEE MQRPGTPLYN IKAYLPVVES FGFSSQLRAA TSGQAFPQCV
901: FDHWEMMSSD PLEAGSQAST LVADIRKRKG MKEQMTPLSD FEDKL

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.