Factsheet for HORVU5Hr1G116710.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70516	Canola	cytosol	79.22	91.36
CDY49974	Canola	nucleus	12.95	89.41
CDY70526	Canola	nucleus	12.78	88.24
Bra010781.1-P	Field mustard	cytosol	81.6	86.78
CDY05533	Canola	cytosol	79.56	71.52
CDY32072	Canola	cytosol	78.36	71.1
CDY54261	Canola	nucleus	25.72	65.65
TraesCS5D01G509600.1	Wheat	cytosol	93.02	64.77
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	93.02	64.77
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	93.02	64.77
TraesCS5B01G509600.1	Wheat	cytosol, golgi	92.84	64.65
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	92.67	64.53
TraesCS5D01G509700.1	Wheat	cytosol	89.95	64.0
HORVU7Hr1G106150.1	Barley	cytosol	91.82	63.94
HORVU3Hr1G057880.1	Barley	cytosol	89.44	62.28
HORVU3Hr1G057890.1	Barley	cytosol	89.44	62.28
GSMUA_Achr10P...	Banana	cytosol	80.41	61.22
KRH43759	Soybean	nucleus	86.71	60.38
KRH13696	Soybean	nucleus	86.54	60.26
VIT_19s0027g00760.t01	Wine grape	cytosol	86.71	59.67
Solyc08g062920.2.1	Tomato	nucleus, plastid	83.99	59.54
Bra010782.1-P	Field mustard	cytosol	85.18	59.31
CDX90241	Canola	cytosol, extracellular	79.73	59.17
AT1G56070.2	Thale cress	cytosol	84.33	58.72
GSMUA_Achr4P01020_001	Banana	cytosol	86.88	58.69
AT3G12915.2	Thale cress	cytosol	77.68	57.87
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	74.45	56.75
Bra017279.1-P	Field mustard	cytosol	84.67	56.61
CDY24982	Canola	endoplasmic reticulum, vacuole	79.22	55.49
CDY40423	Canola	cytosol	72.91	54.38
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	40.2	53.88
Bra020542.1-P	Field mustard	cytosol	85.01	52.8
KRH13692	Soybean	cytosol, mitochondrion	61.33	50.35
KRH13693	Soybean	mitochondrion	69.34	49.21
HORVU1Hr1G003960.9	Barley	cytosol	54.86	34.92
CDY49975	Canola	cytosol	18.23	26.82
HORVU7Hr1G090710.6	Barley	plastid	36.63	21.72
HORVU1Hr1G009320.1	Barley	nucleus	25.55	16.78
HORVU5Hr1G092260.1	Barley	nucleus, plastid	31.86	16.04
HORVU2Hr1G092180.1	Barley	plastid	19.08	14.68
HORVU6Hr1G025120.1	Barley	cytosol	2.56	13.89
HORVU7Hr1G082910.2	Barley	mitochondrion	15.33	11.87
HORVU7Hr1G019550.9	Barley	mitochondrion	10.9	9.58
HORVU3Hr1G072230.1	Barley	plastid	11.07	9.35
HORVU6Hr1G050160.1	Barley	plastid	7.84	8.63
HORVU6Hr1G025110.1	Barley	plastid	7.67	8.43
KRH43761	Soybean	cytosol, nucleus, plastid	1.87	5.5

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	ncoils:Coil	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	EnsemblPlantsGene:HORVU5Hr1G116710	EnsemblPlants:HORVU5Hr1G116710.1	InterPro:IPR014721
PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF54211
SUPFAM:SSF54980	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr5H:+:648638692..648640626

Molecular Weight (calculated)

61409.7 Da

IEP (calculated)

7.625

GRAVY (calculated)

-0.197

Length

587 amino acids

Sequence
(BLAST)

001: ILDTQKTGRX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXKLGVTMK NDEKDLMGKA LMKRVMQTWL PASRALLEMM IFHLPSPSKA QRYRVENLYE
101: GPLDDVYANA IRNCDPDGPL MLYVSKMIPA SDKGRFFAFG RVFAGRVATG MKVRIMGPNF VPGQKKDLYV KSVQRTVIWM GKKQESVEDV PCGNTVALVG
201: LDQFITKNAT LTNEKEVDAC PIRAMKFSVS PVVRVAVQCK VASDLPKLVE GLKRLAKSDP MVLCSIEESG EHIIAGAGEL HLEICLKDLQ EDFMGGAEII
301: VSPPVVSFRE TVLEKSCRTV MSKSPNKHNR LYMEARPLEE GLAEAIDDGR IGPRDDPKVR SKILSEEFGW DKDLAKKIWC FGPETTGPNM VVDMCKGVQY
401: LNEIKDSVVA GFQWASKEGA LAEENMRGIC FEVCDVVLHT DAIHRGGGQV IPTARRVIYA SQLTAKPRLL EPVYLVEIQA PENALGGIYG VLNQKRGHVF
501: EEMQRPGTPL YNIKAYLPVI ESFGFSSTLR AATSGQAFPQ CVFDHWDIMS SDPLEAGSQS ATLVTEIRKR KGLKEQMTPL SDFEDKL

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.