Factsheet for TraesCS1B01G033500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G026800.1	Wheat	cytosol	92.8	53.74
TraesCSU01G002600.1	Wheat	cytosol	95.78	44.73
TraesCS1A01G027600.1	Wheat	cytosol	92.31	44.02
CDY70516	Canola	cytosol	53.6	42.44
CDY49974	Canola	nucleus	8.93	42.35
CDY70526	Canola	nucleus	8.68	41.18
Bra010781.1-P	Field mustard	cytosol	53.85	39.31
HORVU1Hr1G003960.9	Barley	cytosol	83.37	36.44
CDY54261	Canola	nucleus	19.35	33.91
CDY32072	Canola	cytosol	53.85	33.54
CDY05533	Canola	cytosol	53.85	33.23
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	35.48	32.65
CDX90241	Canola	cytosol, extracellular	53.85	27.43
TraesCS5B01G509600.1	Wheat	cytosol, golgi	56.33	26.93
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	56.33	26.93
TraesCS3B01G261500.1	Wheat	cytosol	56.08	26.81
GSMUA_Achr10P...	Banana	cytosol	51.12	26.72
TraesCS7B01G362600.1	Wheat	cytosol	55.58	26.57
TraesCS5B01G509700.1	Wheat	cytosol, golgi	55.09	26.33
KRH43759	Soybean	nucleus	54.84	26.22
VIT_19s0027g00760.t01	Wine grape	cytosol	55.34	26.14
KRH13696	Soybean	nucleus	54.59	26.1
CDY24982	Canola	endoplasmic reticulum, vacuole	53.85	25.89
Bra010782.1-P	Field mustard	cytosol	54.09	25.86
GSMUA_Achr4P01020_001	Banana	cytosol	55.58	25.78
AT1G56070.2	Thale cress	cytosol	53.6	25.62
Solyc08g062920.2.1	Tomato	nucleus, plastid	52.36	25.48
Bra017279.1-P	Field mustard	cytosol	53.6	24.6
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	46.9	24.55
AT3G12915.2	Thale cress	cytosol	47.89	24.49
CDY40423	Canola	cytosol	47.39	24.27
Bra020542.1-P	Field mustard	cytosol	54.09	23.07
KRH13693	Soybean	mitochondrion	45.66	22.25
KRH13692	Soybean	cytosol, mitochondrion	39.45	22.24
TraesCS7B01G282300.1	Wheat	cytosol	29.53	11.97
TraesCS1B01G062700.1	Wheat	cytosol	28.04	11.23
TraesCS5B01G373200.1	Wheat	cytosol	28.54	11.0
TraesCS2B01G404600.1	Wheat	plastid	17.12	8.98
TraesCS7B01G248200.1	Wheat	mitochondrion	16.38	8.71
TraesCS3B01G326200.1	Wheat	mitochondrion	11.66	6.98
TraesCS6B01G159200.1	Wheat	plastid	11.17	6.72
TraesCS6B01G224800.2	Wheat	plastid	10.67	6.37
CDY49975	Canola	cytosol	3.72	3.76
KRH43761	Soybean	cytosol, nucleus, plastid	1.24	2.5
Os05t0467501-00	Rice	cytosol	1.74	1.54

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	MapMan:35.1	InterPro:EFG_III/V
InterPro:EFG_V-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	InterPro:IPR014721
PFAM:PF00679	PFAM:PF03764	PFAM:PF14492	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00889	SUPFAM:SSF54211	SUPFAM:SSF54980	EnsemblPlantsGene:TraesCS1B01G033500	EnsemblPlants:TraesCS1B01G033500.1
InterPro:Transl_elong_EFG/EF2_IV	TIGR:cd01681	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:-:16244001..16254999

Molecular Weight (calculated)

44271.0 Da

IEP (calculated)

8.081

GRAVY (calculated)

-0.051

Length

403 amino acids

Sequence
(BLAST)

001: MGKKQCDVPD VPCGNTVGLI GLDACITKSA TPTSEKEVVA RPIRAMKLSV CPLMFVTVNC KVPSESPKLV QGLKRLAMSD HVVLWSQVEP GTFTVAGVGE
101: LHLEICLKDL QEDFMDGVEV VVSSPPVVSF RETVRKSCDP VERKSRNKQI QCSLSVVARP LDENLVEAIE DGRLGPRTDH AVRSEILAKH GWDKDLGDKI
201: WCFGPDAVGP NVIVNRCNII QNLELAKKVI VAGFEMVAKE GALAKEKLHG ICFEVHNVNI RADEAVRGTT AQLNEMVRTA LIESQLAAKP RLLEPTYIVA
301: IQCPKSALST IYGILHQRNG SVYEEFVREG TMLHILKAYV PVYDSFGLSK AISAATSKLV TPQCIFGYWS DMCSDPFQAN APAGQMVLDI RKRKKMGRPS
401: FQK

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.