Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY46917 Canola plastid 99.87 99.87
AT1G62750.1 Thale cress plastid 96.39 95.4
VIT_00s1286g00020.t01 Wine grape cytosol, mitochondrion 25.03 91.94
Os04t0538166-00 Rice cytosol, mitochondrion, peroxisome 16.26 89.36
Os04t0538100-01 Rice plasma membrane 43.61 87.56
Solyc08g079180.2.1 Tomato plastid 85.55 84.24
PGSC0003DMT400012076 Potato cytosol, plastid 85.55 84.24
VIT_00s0323g00080.t01 Wine grape plastid 84.13 84.13
KRH57341 Soybean nucleus, plastid 84.39 83.85
GSMUA_Achr5P13570_001 Banana mitochondrion 77.94 83.43
KRH04069 Soybean nucleus, plastid 84.39 83.1
Zm00001d025948_P001 Maize plastid 80.39 81.12
Zm00001d002822_P001 Maize plastid 80.13 80.75
TraesCS2A01G387000.1 Wheat mitochondrion, plastid 79.61 80.34
TraesCS2D01G383800.1 Wheat mitochondrion, plastid 79.61 80.34
TraesCS2B01G404600.1 Wheat plastid 79.48 80.21
EES12566 Sorghum plastid 80.13 80.13
HORVU2Hr1G092180.1 Barley plastid 78.71 79.95
Bra004884.1-P Field mustard plastid 42.06 43.18
Bra010782.1-P Field mustard cytosol 22.97 21.12
Bra017279.1-P Field mustard cytosol 22.84 20.16
Bra010781.1-P Field mustard cytosol 14.32 20.11
Bra022824.1-P Field mustard mitochondrion 16.0 19.65
Bra021694.1-P Field mustard mitochondrion 16.39 19.48
Bra020542.1-P Field mustard cytosol 23.1 18.94
Bra028651.1-P Field mustard plastid 16.13 18.27
Bra024798.1-P Field mustard cytosol 22.32 17.58
Bra030642.1-P Field mustard cytosol 22.32 17.53
Bra028444.1-P Field mustard mitochondrion 14.84 17.4
Bra008811.1-P Field mustard plastid 15.1 17.36
Bra033543.1-P Field mustard cytosol 18.32 15.6
Bra033895.1-P Field mustard cytosol, nucleus, plastid 9.16 14.76
Protein Annotations
MapMan:17.7.4.3Gene3D:2.40.30.10Gene3D:3.30.230.10Gene3D:3.30.70.240Gene3D:3.30.70.870Gene3D:3.40.50.300
EnsemblPlantsGene:Bra027021EnsemblPlants:Bra027021.1EnsemblPlants:Bra027021.1-PInterPro:EFG_IIIInterPro:EFG_III/VInterPro:EFG_V
InterPro:EFG_V-likeInterPro:EFTu-like_2InterPro:EF_G_plantCGO:GO:0000166GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003746GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005524
GO:GO:0005525GO:GO:0005575GO:GO:0005576GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0006412GO:GO:0006414GO:GO:0007275GO:GO:0008135GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009658
GO:GO:0009791GO:GO:0009845GO:GO:0009941GO:GO:0009987GO:GO:0016043GO:GO:0016787
GO:GO:0019538GO:GO:0048046InterPro:G_TR_CSInterPro:IPR000795InterPro:IPR014721UniProt:M4EE11
HAMAP:MF_00054_BHAMAP:MF_03063InterPro:P-loop_NTPasePFAM:PF00009PFAM:PF00679PFAM:PF03144
PFAM:PF03764PFAM:PF14492PRINTS:PR00315ScanProsite:PS00301PFscan:PS51722PANTHER:PTHR43261
InterPro:Ribosomal_S5_D2-typ_foldInterPro:Ribosomal_S5_D2-typ_fold_subgrSMART:SM00838SMART:SM00889SUPFAM:SSF50447SUPFAM:SSF52540
SUPFAM:SSF54211SUPFAM:SSF54980InterPro:Small_GTP-bd_domInterPro:TF_GTP-bd_domTIGRFAMs:TIGR00231TIGRFAMs:TIGR00484
InterPro:Transl_B-barrel_sfInterPro:Transl_elong_EFG/EF2InterPro:Transl_elong_EFG/EF2_IVUniParc:UPI0002542504::
Description
AT1G62750 (E=0.0) ATSCO1, ATSCO1/CPEF-G, SCO1 | SCO1 (SNOWY COTYLEDON 1); ATP binding / translation elongation factor/ translation factor, nucleic acid binding
Coordinates
chrA09:+:7681249..7683830
Molecular Weight (calculated)
85234.6 Da
IEP (calculated)
5.831
GRAVY (calculated)
-0.214
Length
775 amino acids
Sequence
(BLAST)
001: MAADALRISS SSSLVCNLNG SQRRPVLTPL SHHRSTFLGL PPRASLSHLL GKARIGLGSS KLVHRKKQFS VFAAAEGEGK RAVPLKDYRN IGIMAHIDAG
101: KTTTTERILY YTGRNYKIGE VHEGTATMDW MEQEQERGIT ITSAATTTFW DKHRINIIDT PGHVDFTLEV ERALRVLDGA ICLFDSVAGV EPQSETVWRQ
201: ADKYGVPRIC FVNKMDRLGA NFFRTRDMIV TNLGAKPLVL QIPIGAEDSF KGVVDLVRMK AIVWSGEELG AKFNYEDIPA DLEELAQEYR AAMMELIVDL
301: GDEVMENYLE GVEPDEATVK RLVRKGTITG KFVPILCGSA FKNKGVQPLL DAVVDYLPSP VEVPPMNGTD PENPEVTIVR KPDDEEPFAG LAFKIMSDPF
401: VGSLTFVRVY SGKLTAGSYV LNANKGKKER IGRLLEMHAN SREDVKVALT GDIVALAGLK DTITGETLSD PESPVVLERM DFPDPVIKVA IEPKTKADID
501: KMATGLIKLA QEDPSFHFSR DEEMNQTVIE GMGELHLEII VDRLKREFKV EANVGAPQVN YRESISKVAE VKYTHKKQSG GQGQFADITV RFEPLEAGSG
601: YEFKSEIKGG AVPREYIPGV MKGLEECMGS GVLAGFPVVD VRACLVDGSY HDVDSSVLAF QLAARGAFRE GMRKAGPRML EPIMRVEVVT PEEHLGDVIG
701: DLNSRRGQIN SFGDKPGGLK VVDSLVPLAE MFQYVSTLRG MTKGRASYTM QLAKFDVVPQ HIQNQLSSKD QEVAA
Best Arabidopsis Sequence Match ( AT1G62750.1 )
(BLAST)
001: MAADALRISS SSSGSLVCNL NGSQRRPVLL PLSHRATFLG LPPRASSSSI SSSIPQFLGT SRIGLGSSKL SQKKKQFSVF AAAEAEAKRA VPLKDYRNIG
101: IMAHIDAGKT TTTERILYYT GRNYKIGEVH EGTATMDWME QEQERGITIT SAATTTFWDK HRINIIDTPG HVDFTLEVER ALRVLDGAIC LFDSVAGVEP
201: QSETVWRQAD KYGVPRICFV NKMDRLGANF FRTRDMIVTN LGAKPLVLQI PIGAEDVFKG VVDLVRMKAI VWSGEELGAK FSYEDIPEDL EDLAQEYRAA
301: MMELIVDLDD EVMENYLEGV EPDEATVKRL VRKGTITGKF VPILCGSAFK NKGVQPLLDA VVDYLPSPVE VPPMNGTDPE NPEITIIRKP DDDEPFAGLA
401: FKIMSDPFVG SLTFVRVYSG KISAGSYVLN ANKGKKERIG RLLEMHANSR EDVKVALTGD IIALAGLKDT ITGETLSDPE NPVVLERMDF PDPVIKVAIE
501: PKTKADIDKM ATGLIKLAQE DPSFHFSRDE EMNQTVIEGM GELHLEIIVD RLKREFKVEA NVGAPQVNYR ESISKIAEVK YTHKKQSGGQ GQFADITVRF
601: EPLEAGSGYE FKSEIKGGAV PREYIPGVMK GLEECMSTGV LAGFPVVDVR ACLVDGSYHD VDSSVLAFQL AARGAFREGM RKAGPRMLEP IMRVEVVTPE
701: EHLGDVIGDL NSRRGQINSF GDKPGGLKVV DSLVPLAEMF QYVSTLRGMT KGRASYTMQL AKFDVVPQHI QNQLSSKDQE VAA
Arabidopsis Description
CPEFGElongation factor G, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI75]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.