Factsheet for VIT_00s0323g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1286g00020.t01	Wine grape	cytosol, mitochondrion	27.23	100.0
Os04t0538166-00	Rice	cytosol, mitochondrion, peroxisome	16.39	90.07
Os04t0538100-01	Rice	plasma membrane	43.48	87.31
KRH57341	Soybean	nucleus, plastid	87.61	87.05
KRH04069	Soybean	nucleus, plastid	87.74	86.4
CDY31838	Canola	plastid	84.39	84.39
CDY46917	Canola	plastid	84.26	84.26
Solyc08g079180.2.1	Tomato	plastid	85.55	84.24
Bra027021.1-P	Field mustard	plastid	84.13	84.13
GSMUA_Achr5P13570_001	Banana	mitochondrion	78.58	84.12
PGSC0003DMT400012076	Potato	cytosol, plastid	85.29	83.99
AT1G62750.1	Thale cress	plastid	84.52	83.65
EES12566	Sorghum	plastid	81.55	81.55
Zm00001d002822_P001	Maize	plastid	80.9	81.53
Zm00001d025948_P001	Maize	plastid	80.77	81.51
HORVU2Hr1G092180.1	Barley	plastid	79.74	81.0
TraesCS2B01G404600.1	Wheat	plastid	80.26	80.99
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	80.13	80.86
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	80.13	80.86
VIT_15s0021g02450.t01	Wine grape	mitochondrion, plastid	41.81	43.43
VIT_19s0027g00760.t01	Wine grape	cytosol	23.1	20.98
VIT_12s0028g02640.t01	Wine grape	mitochondrion, plastid	16.65	19.2
VIT_07s0031g03050.t01	Wine grape	plastid	15.48	17.65
VIT_08s0007g08290.t01	Wine grape	plastid	15.35	17.63
VIT_14s0108g00130.t01	Wine grape	mitochondrion, plastid	14.84	16.89
VIT_04s0044g01790.t01	Wine grape	cytosol	22.32	16.8
VIT_11s0118g00720.t01	Wine grape	nucleus	20.9	16.4

Protein Annotations

EntrezGene:100257414	wikigene:100257414	EntrezGene:100854341	wikigene:100854341	MapMan:17.7.4.3	Gene3D:2.40.30.10
Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300	ProteinID:CCB50205	ProteinID:CCB50205.1
ProteinID:CCB51768	ProteinID:CCB51768.1	InterPro:EFG_III	InterPro:EFG_III/V	InterPro:EFG_V	InterPro:EFG_V-like
InterPro:EFTu-like_2	InterPro:EF_G_plantC	UniProt:F6HHS2	EMBL:FN595597	EMBL:FN595760	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:IPR014721	EntrezGene:LOC100257414	wikigene:LOC100257414	EntrezGene:LOC100854341	wikigene:LOC100854341
HAMAP:MF_00054_B	HAMAP:MF_03063	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43261
PANTHER:PTHR43261:SF1	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	TIGR:TC53674	TIGR:TC66117
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00484	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2	InterPro:Transl_elong_EFG/EF2_IV
UniParc:UPI0002108214	ArrayExpress:VIT_00s0323g00080	EnsemblPlantsGene:VIT_00s0323g00080	EnsemblPlants:VIT_00s0323g00080.t01	RefSeq:XP_002264221	RefSeq:XP_002264221.2
SEG:seg	:	:	:	:	:

Description

Elongation factor G, chloroplastic [Source:UniProtKB/TrEMBL;Acc:F6HHS2]

Coordinates

chrUn:+:23344145..23348465

Molecular Weight (calculated)

85312.4 Da

IEP (calculated)

5.437

GRAVY (calculated)

-0.207

Length

775 amino acids

Sequence
(BLAST)

001: MAESVRMSAT GSSLRSFSGS RRPIPLSPSR FLLPSRHSSS SYRSQFVGNV HLRSRLSKAS NLQQQRGKFS VFAMAADESK RTVPLVDYRN IGIMAHIDAG
101: KTTTTERILY YTGRNYKIGE VHEGTATMDW MEQEQERGIT ITSAATTTFW NKHRINIIDT PGHVDFTLEV ERALRVLDGA ICLFDSVAGV EPQSETVWRQ
201: ADKYGVPRIC FVNKMDRLGA NFFRTRDMIV TNLGAKPLVI QLPIGAEDNF RGVIDLVKMQ AVLWSGEELG AKFAYDDIPS DLLELAQDYR SQMIETIVEL
301: DDEAMEGYLE GVEPDEETIK KLIRKGTISA SFVPVLCGSA FKNKGVQPLL DAVVDYLPSP LDLPAMKGTD PENPEVTVER AASDEEPFAG LAFKIMSDPF
401: VGSLTFVRVY AGKLAAGSYV LNANKGKKER IGRLLEMHAN SREDVKVALA GDIVALAGLK DTITGETLCD PENPIVLERM DFPDPVIKVA IEPKTKADVD
501: KMASGLVKLA QEDPSFHFSR DEEINQTVIE GMGELHLEII VDRLKREFKV EANVGAPQVN YRESISKVSE VKYVHKKQSG GQGQFADITV RFEPIEAGSG
601: YEFKSEIKGG AVPKEYIPGV MKGLEECMSN GVLAGFPVVD VRAVLVDGSY HDVDSSVLAF QLAARGAFRE GMRKAAPKML EPIMKVEVVT PEEHLGDVIG
701: DLNSRRGQIN SFGDKPGGLK VVDALVPLAE MFQYVSTLRG MTKGRASYTM QLAKFEVVPQ HIQNELAAKE QAVAA

Best Arabidopsis Sequence Match ( AT1G62750.1 )
(BLAST)

001: MAADALRISS SSSGSLVCNL NGSQRRPVLL PLSHRATFLG LPPRASSSSI SSSIPQFLGT SRIGLGSSKL SQKKKQFSVF AAAEAEAKRA VPLKDYRNIG
101: IMAHIDAGKT TTTERILYYT GRNYKIGEVH EGTATMDWME QEQERGITIT SAATTTFWDK HRINIIDTPG HVDFTLEVER ALRVLDGAIC LFDSVAGVEP
201: QSETVWRQAD KYGVPRICFV NKMDRLGANF FRTRDMIVTN LGAKPLVLQI PIGAEDVFKG VVDLVRMKAI VWSGEELGAK FSYEDIPEDL EDLAQEYRAA
301: MMELIVDLDD EVMENYLEGV EPDEATVKRL VRKGTITGKF VPILCGSAFK NKGVQPLLDA VVDYLPSPVE VPPMNGTDPE NPEITIIRKP DDDEPFAGLA
401: FKIMSDPFVG SLTFVRVYSG KISAGSYVLN ANKGKKERIG RLLEMHANSR EDVKVALTGD IIALAGLKDT ITGETLSDPE NPVVLERMDF PDPVIKVAIE
501: PKTKADIDKM ATGLIKLAQE DPSFHFSRDE EMNQTVIEGM GELHLEIIVD RLKREFKVEA NVGAPQVNYR ESISKIAEVK YTHKKQSGGQ GQFADITVRF
601: EPLEAGSGYE FKSEIKGGAV PREYIPGVMK GLEECMSTGV LAGFPVVDVR ACLVDGSYHD VDSSVLAFQL AARGAFREGM RKAGPRMLEP IMRVEVVTPE
701: EHLGDVIGDL NSRRGQINSF GDKPGGLKVV DSLVPLAEMF QYVSTLRGMT KGRASYTMQL AKFDVVPQHI QNQLSSKDQE VAA

Arabidopsis Description

CPEFGElongation factor G, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.