Factsheet for VIT_11s0118g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g007210.2.1	Tomato	nucleus	86.84	92.76
CDY71233	Canola	mitochondrion, nucleus	51.62	91.4
CDY70689	Canola	cytosol	49.9	91.13
PGSC0003DMT400078978	Potato	cytosol	90.38	90.48
KRH20245	Soybean	nucleus	89.88	90.06
KRH03566	Soybean	nucleus	89.78	89.78
CDY15566	Canola	cytosol	75.0	88.96
Bra030642.1-P	Field mustard	cytosol	87.55	87.64
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	86.03	87.54
AT1G06220.2	Thale cress	cytosol	87.45	87.54
Bra024798.1-P	Field mustard	cytosol	87.15	87.5
CDY09982	Canola	nucleus	86.94	86.86
AT5G25230.1	Thale cress	cytosol	84.62	85.92
EER90029	Sorghum	cytosol	82.19	81.61
CDY69302	Canola	cytosol	26.32	81.5
Zm00001d046549_P002	Maize	cytosol	80.36	81.1
Os06t0608300-01	Rice	nucleus	81.68	80.94
TraesCS7A01G380300.1	Wheat	nucleus	80.87	80.38
TraesCS7D01G376800.1	Wheat	cytosol	80.87	80.38
TraesCS7B01G282300.1	Wheat	cytosol	80.77	80.28
HORVU7Hr1G090710.6	Barley	plastid	78.54	78.38
VIT_19s0027g00760.t01	Wine grape	cytosol	33.5	38.8
VIT_04s0044g01790.t01	Wine grape	cytosol	25.61	24.56
VIT_00s0323g00080.t01	Wine grape	plastid	16.4	20.9
VIT_15s0021g02450.t01	Wine grape	mitochondrion, plastid	15.18	20.11
VIT_00s1286g00020.t01	Wine grape	cytosol, mitochondrion	4.25	19.91
VIT_12s0028g02640.t01	Wine grape	mitochondrion, plastid	12.55	18.45
VIT_08s0007g08290.t01	Wine grape	plastid	11.84	17.33
VIT_14s0108g00130.t01	Wine grape	mitochondrion, plastid	11.23	16.3
VIT_07s0031g03050.t01	Wine grape	plastid	11.13	16.18

Protein Annotations

EntrezGene:100253367	wikigene:100253367	MapMan:16.4.1.4.2	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240
Gene3D:3.30.70.870	Gene3D:3.40.50.300	Gene3D:3.90.1430.10	UniProt:A5BRS2	EMBL:AM468674	ProteinID:CAN81413
ProteinID:CAN81413.1	ProteinID:CCB49931	ProteinID:CCB49931.1	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTUD2_N
InterPro:EFTu-like_2	EMBL:FN595515	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR000795	InterPro:IPR014721	EntrezGene:LOC100253367
wikigene:LOC100253367	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764
PFAM:PF16004	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF6	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211
SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	TIGR:TC65611	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EFG/EF2_IV	InterPro:U5-116kDa_C	UniParc:UPI0001524947	ArrayExpress:VIT_11s0118g00720	EnsemblPlantsGene:VIT_11s0118g00720	EnsemblPlants:VIT_11s0118g00720.t01
unigene:Vvi.9103	RefSeq:XP_002267199	RefSeq:XP_002267199.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:6489422..6498313

Molecular Weight (calculated)

110332.0 Da

IEP (calculated)

4.754

GRAVY (calculated)

-0.231

Length

988 amino acids

Sequence
(BLAST)

001: MDDSLYDEFG NYIGPEIESD RESDGDDQDE DIPDKPDEEE MVSDVEDAVA ASNGWITASN DVDMDNQIVL AEDKKYYPTA EEVYGEDVET LVMDEDEQPL
101: EQPIIKPVRN IKFELGVKDS STYVSTQFLL GLMSNPALVR NVALVGHLQH GKTLFMDMLV EQTHHISTFD SNSEKHMRYT DTRIDEQERR ISIKAVPMSL
201: VLEDSNSKSY LCNIMDTPGH VNFSDEMTAA LRLADGAVLI VDAAEGVMVN TERAIRHAIQ ERLPIVVVIN KVDRLITELK LPPKDAYHKL RHTLELINNH
301: ISAASSTAGN VQIIDPAAGN VCFASASAGW SFTLQSFAKL YVKLHGVPFD ANKFASRLWG DMYYHPDARV FRKKPPASGG ERSFVQFVLE PLYKIYSQVI
401: GEHKKSVEST LAELGVTLSN AAYKLNVRPL LRLACSSVFG SATGFTDMLV QHIPSAKDAA AKKVDHIYTG PKDSAIYQAM EDCDSSGPLM VNVTKLYPKS
501: DCSVFDAFGR VYSGEIQTGQ TLRVLGEGYS PEDEEDMTVK EVTKLWVYQA RYRIPISKAP PGSWVLIEGV DASIMKTATL CNLDYDEDVY IFRPLLFNTL
601: PVVKTATEPL NPSELPKMVE GLRKISKSYP LAITKVEESG EHTILGTGEL YLDSIMKDLR ELYSEVEVKV ADPVVSFCET VVESSSMKCF AETPNKKNKI
701: TMIAEPLEKG LAEDIENGVV SIDWHRKKLG DFFQTKYDWD LLAARSIWAF GPDKQGPNIL LDDTLSSEVD KNLLNAVKDS IVQGFQWGAR EGPLCDEPIR
801: NVKFKIVDAR IAPEPLHRGT GQIIPTARRV AYSAFLMATP RLMEPVYYVE IQTPIDCVSA IYTVLSRRRG HVTADVPQPG TPAYIVKAFL PVIESFGFET
901: DLRYHTQGQA FCASVFDHWA IVPGDPLDKS IVLRPLEPAP IQHLAREFMV KTRRRKGMSE DVSINKFFDE AMVVELAQQA ADLHQQMI

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.