CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71233	Canola	mitochondrion, nucleus	66.99	100.0
CDY70689	Canola	cytosol	64.71	99.63
Bra030642.1-P	Field mustard	cytosol	99.76	84.19
CDY09982	Canola	nucleus	98.2	82.71
AT1G06220.2	Thale cress	cytosol	96.28	81.26
AT5G25230.1	Thale cress	cytosol	93.88	80.37
Solyc07g007210.2.1	Tomato	nucleus	86.43	77.84
VIT_11s0118g00720.t01	Wine grape	nucleus	88.96	75.0
KRH20245	Soybean	nucleus	87.39	73.83
KRH03566	Soybean	nucleus	87.52	73.79
PGSC0003DMT400078978	Potato	cytosol	86.19	72.75
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	83.79	71.88
EER90029	Sorghum	cytosol	82.47	69.05
Zm00001d046549_P002	Maize	cytosol	80.91	68.85
Os06t0608300-01	Rice	nucleus	81.75	68.3
HORVU7Hr1G090710.6	Barley	plastid	80.55	67.78
TraesCS7B01G282300.1	Wheat	cytosol	80.79	67.71
TraesCS7D01G376800.1	Wheat	cytosol	80.79	67.71
TraesCS7A01G380300.1	Wheat	nucleus	80.67	67.61
CDY69302	Canola	cytosol	19.57	51.1
CDY49974	Canola	nucleus	4.56	44.71
CDY70526	Canola	nucleus	4.56	44.71
CDY70516	Canola	cytosol	26.29	43.03
CDY05533	Canola	cytosol	30.85	39.36
CDY32072	Canola	cytosol	30.37	39.1
CDX90241	Canola	cytosol, extracellular	36.61	38.56
CDY54261	Canola	nucleus	10.32	37.39
CDY40423	Canola	cytosol	34.69	36.72
CDY24982	Canola	endoplasmic reticulum, vacuole	36.25	36.04
CDY49975	Canola	cytosol	15.61	32.58
CDY32224	Canola	cytosol	17.17	27.77
CDY10337	Canola	cytosol	15.25	26.79
CDY10688	Canola	cytosol	26.29	25.11
CDY32225	Canola	nucleus	9.6	22.6
CDY46917	Canola	plastid	19.21	20.65
CDY31838	Canola	plastid	19.21	20.65
CDX74705	Canola	plastid	16.21	17.88
CDY18957	Canola	plastid	16.21	17.86
CDX84803	Canola	mitochondrion	12.24	16.35
CDX67441	Canola	plastid	12.85	15.6
CDY54484	Canola	mitochondrion	12.48	15.55
CDY19061	Canola	mitochondrion	12.48	15.55
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	12.61	15.26
CDY44781	Canola	plastid	12.24	15.11
CDY40739	Canola	plastid	12.24	14.91
CDX91105	Canola	plastid	11.88	14.69
CDY65992	Canola	plastid	11.88	14.69
CDY09816	Canola	plastid	11.88	14.67
CDX85635	Canola	plastid	11.88	13.98
CDY23967	Canola	cytosol	1.32	9.48
CDX78349	Canola	cytosol	2.28	8.23

Protein Annotations

MapMan:16.4.1.4.2	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	GO:A0A078FR27	UniProt:A0A078FR27	EnsemblPlants:CDY15566	ProteinID:CDY15566	ProteinID:CDY15566.1
InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00089743001	InterPro:IPR000795
InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764
PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF6	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980
InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	InterPro:U5-116kDa_C	UniParc:UPI0004EEE17F	:

Description

BnaA08g28500DBnaA08g28500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR27]

Coordinates

chrLK032055:+:555064..558670

Molecular Weight (calculated)

93068.8 Da

IEP (calculated)

5.838

GRAVY (calculated)

-0.189

Length

833 amino acids

Sequence
(BLAST)

001: MDMLVEQTHH MTTFNAKNEK HMKYTDTRVD EQERNISIKA VPMSLVLEDS RSKSYLCNVV DTPGHVNFSD EMTASLRLSD GAVLIVDAAE GVMVNTERAI
101: RHAIQDHLPI VVVINKVDRL ITELKLPPRD AYYKLRHTIE VINNHISAAS TTAGNLPLID PAAGNVCFAS GTAGWSFTLQ SFAKLYSKLH GVDMDVDKFA
201: SKLWGDVYYH PDTRAFKRNP PVGGGERAFV QFILEPLYKI YSQVIGEHKK SVETTLAELG VTLSNSAYKL NVRPLLRLAC SSVFGSSSGF TDMLVKHIPS
301: PKEAAARKVD HAYTGPKDSA IYEAMVECDP SGPLMVNVTK LYPKSDTSVF DVFGRVYSGT LQTGQSVRVL GEGYSPEDEE DMTVKEVTKL WIYQARYRIP
401: VSSAPPGSWV LIEGVDASIM KTATLCNENY DEDVFIFRAL QFNTLPVVKT ATEPLNPSEL PKMVEGLRKI SKSYPLAITK VEESGEHTIL GTGELYLDSI
501: MKDLRELYSE VEVKVADPVV SFCETVVESS SMKCFAETPN KKNKITMIAE PLDRGLAEDI ENGVVSIDWN RKQLGDFFKT KYDWDLLAAR SIWAFGPDKQ
601: GPNILLDDTL PTEVDKNLMM AVKDSIVQGF QWGAREGPLC DEPIRNVKFK IVDAWIAPEP LHRGSGQMIP TARRVAYSSF LMATPRLMEP VYYVEIQTPI
701: DCVTAIYTVL SRRRGHVTSD VPQPGTPAYI VKAFLPVIES FGFETDLRYH TQGQAFCVSV FDHWAIVPGD PLDKSILLRP LEPAPIQHLA REFMVKTRRR
801: KGMSEDVSGN KFFDEAMMVE LAQQTGDLHL QMM

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.