Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71233 | Canola | mitochondrion, nucleus | 55.61 | 98.57 |
| CDY15566 | Canola | cytosol | 82.71 | 98.2 |
| CDY70689 | Canola | cytosol | 53.69 | 98.15 |
| AT1G06220.2 | Thale cress | cytosol | 94.24 | 94.43 |
| CDY69302 | Canola | cytosol | 30.33 | 94.04 |
| AT5G25230.1 | Thale cress | cytosol | 90.8 | 92.29 |
| VIT_11s0118g00720.t01 | Wine grape | nucleus | 86.86 | 86.94 |
| Solyc07g007210.2.1 | Tomato | nucleus | 80.08 | 85.62 |
| KRH20245 | Soybean | nucleus | 84.63 | 84.89 |
| KRH03566 | Soybean | nucleus | 84.73 | 84.82 |
| PGSC0003DMT400078978 | Potato | cytosol | 83.92 | 84.09 |
| GSMUA_Achr4P09280_001 | Banana | cytosol, nucleus, plastid | 80.49 | 81.98 |
| Zm00001d046549_P002 | Maize | cytosol | 77.45 | 78.24 |
| EER90029 | Sorghum | cytosol | 78.67 | 78.19 |
| Os06t0608300-01 | Rice | nucleus | 78.36 | 77.73 |
| TraesCS7D01G376800.1 | Wheat | cytosol | 77.15 | 76.76 |
| TraesCS7A01G380300.1 | Wheat | nucleus | 77.05 | 76.66 |
| TraesCS7B01G282300.1 | Wheat | cytosol | 77.05 | 76.66 |
| HORVU7Hr1G090710.6 | Barley | plastid | 74.82 | 74.75 |
| CDY49974 | Canola | nucleus | 3.84 | 44.71 |
| CDY70526 | Canola | nucleus | 3.84 | 44.71 |
| CDY70516 | Canola | cytosol | 22.04 | 42.83 |
| CDY05533 | Canola | cytosol | 26.09 | 39.51 |
| CDX90241 | Canola | cytosol, extracellular | 31.45 | 39.32 |
| CDY32072 | Canola | cytosol | 25.68 | 39.26 |
| CDY24982 | Canola | endoplasmic reticulum, vacuole | 31.95 | 37.71 |
| CDY54261 | Canola | nucleus | 8.7 | 37.39 |
| CDY40423 | Canola | cytosol | 29.73 | 37.36 |
| CDY49975 | Canola | cytosol | 13.75 | 34.09 |
| CDY10337 | Canola | cytosol | 13.75 | 28.69 |
| CDY32224 | Canola | cytosol | 14.46 | 27.77 |
| CDY10688 | Canola | cytosol | 23.15 | 26.26 |
| CDY32225 | Canola | nucleus | 8.09 | 22.6 |
| CDY46917 | Canola | plastid | 17.69 | 22.58 |
| CDY31838 | Canola | plastid | 17.59 | 22.45 |
| CDX74705 | Canola | plastid | 15.37 | 20.13 |
| CDY18957 | Canola | plastid | 15.37 | 20.11 |
| CDX84803 | Canola | mitochondrion | 11.63 | 18.43 |
| CDX67441 | Canola | plastid | 12.64 | 18.22 |
| CDY54484 | Canola | mitochondrion | 12.23 | 18.09 |
| CDY19061 | Canola | mitochondrion | 12.23 | 18.09 |
| CDY65319 | Canola | endoplasmic reticulum, plastid, vacuole | 12.34 | 17.73 |
| CDX91105 | Canola | plastid | 11.63 | 17.06 |
| CDY65992 | Canola | plastid | 11.63 | 17.06 |
| CDY09816 | Canola | plastid | 11.63 | 17.04 |
| CDY44781 | Canola | plastid | 11.53 | 16.89 |
| CDY40739 | Canola | plastid | 11.53 | 16.67 |
| CDX85635 | Canola | plastid | 11.73 | 16.38 |
| CDX78349 | Canola | cytosol | 2.73 | 11.69 |
| CDY23967 | Canola | cytosol | 1.11 | 9.48 |
Protein Annotations
| MapMan:16.4.1.4.2 | Gene3D:2.40.30.10 | Gene3D:3.30.230.10 | Gene3D:3.30.70.240 | Gene3D:3.30.70.870 | Gene3D:3.40.50.300 |
| Gene3D:3.90.1430.10 | GO:A0A078FAC5 | UniProt:A0A078FAC5 | EnsemblPlants:CDY09982 | ProteinID:CDY09982 | ProteinID:CDY09982.1 |
| InterPro:EFG_III/V | InterPro:EFG_V-like | InterPro:EFTUD2_N | InterPro:EFTu-like_2 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00031758001 |
| InterPro:IPR000795 | InterPro:IPR014721 | InterPro:P-loop_NTPase | PFAM:PF00009 | PFAM:PF00679 | PFAM:PF03144 |
| PFAM:PF03764 | PFAM:PF16004 | PRINTS:PR00315 | PFscan:PS51722 | PANTHER:PTHR42908 | PANTHER:PTHR42908:SF6 |
| InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | SMART:SM00838 | SMART:SM00889 | SUPFAM:SSF50447 | SUPFAM:SSF52540 |
| SUPFAM:SSF54211 | SUPFAM:SSF54980 | InterPro:Small_GTP-bd_dom | InterPro:TF_GTP-bd_dom | TIGRFAMs:TIGR00231 | InterPro:Transl_B-barrel_sf |
| InterPro:Transl_elong_EFG/EF2_IV | InterPro:U5-116kDa_C | UniParc:UPI0004EE124A | : | : | : |
Description
BnaC08g44690DBnaC08g44690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAC5]
Coordinates
chrLK032000:-:334555..338949
Molecular Weight (calculated)
110731.0 Da
IEP (calculated)
4.737
GRAVY (calculated)
-0.278
Length
989 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSLYDEFG NYIGPEIESD QESDNDIEDE EFQENHREED GSDGEQHPPP GGSNGWITTI NDVEMDNQIV LPEDKKYYPT AEEVYGEDVE TLVMDEDEQP
101: LEMPIIKPVR DVRFEVGVKD STTYVSTQFL VGLMANPALV RNVALVGHLQ HGKTVFMDML VEQTHRMTTF NAKNEKHMKY TDTRVDEQER NISIKAVPMS
201: LVLEDSRSKS YLCNVIDTPG HVNFSDEMTA SLRLSDGAVL IVDAAEGVMV NTERAIRHAI QDHLPIVVVI NKVDRLITEL KLPPRDAYYK LRHTIEVINN
301: HISAASTTAG NLPLIDPAAG NVCFASGSAG WSFTLQSFAK LYSKLHGVEM DVDKFASRLW GDVYYHPDTR AFKRSPPVGG GERAFVQFIL EPLYKIYSQV
401: IGEHKKSVET TLAELGVTLS NGAYKLNVRP LLRLACSSVF GSSSGFTDML VKHIPSPKEA AARKVDHAYT GPKDSTIYES MVECDPSGPL MVNVTKLYPK
501: SDTSVFEVFG RVYSGTLQTG QSVRVLGEGY SPEDEEDMTV KEVTKLWIYQ ARYRVSVSSA PPGSWVLIEG VDASIMKTAT LCNESYEEDV YIFRALQFNT
601: LPVVKTATEP LNPSELPKMV EGLRKISKSY PLAITKVEES GEHTILGTGE LYLDSIMKDL RELYSEVEVK VADPVVSFCE TVVESSSMKC FAETPNKKNK
701: ITMIAEPLDR GLAEDIENGV VSIDWNRKQL GDFFKTKYDW DLLAARSIWA FGPDKQGPNI LLDDTLPTEV DKNLMMAVKD SIVQGFQWGA REGPLCDEPI
801: RNVKFKIVDA WIAPEPLHRG SGQMIPTARR VAYSSFLMAT PRLMEPVYYV EIQTPIDCVT AIYTVLSRRR GHVTSDVPQP GTPAYIVKAF LPVIESFGFE
901: TDLRYHTQGQ AFCVSVFDHW AIVPGDPLDK SILLRPLEPA PIQHLAREFM VKTRRRKGMS EDVSGNKFFD EAMMVELAQQ TGDLHLQMM
101: LEMPIIKPVR DVRFEVGVKD STTYVSTQFL VGLMANPALV RNVALVGHLQ HGKTVFMDML VEQTHRMTTF NAKNEKHMKY TDTRVDEQER NISIKAVPMS
201: LVLEDSRSKS YLCNVIDTPG HVNFSDEMTA SLRLSDGAVL IVDAAEGVMV NTERAIRHAI QDHLPIVVVI NKVDRLITEL KLPPRDAYYK LRHTIEVINN
301: HISAASTTAG NLPLIDPAAG NVCFASGSAG WSFTLQSFAK LYSKLHGVEM DVDKFASRLW GDVYYHPDTR AFKRSPPVGG GERAFVQFIL EPLYKIYSQV
401: IGEHKKSVET TLAELGVTLS NGAYKLNVRP LLRLACSSVF GSSSGFTDML VKHIPSPKEA AARKVDHAYT GPKDSTIYES MVECDPSGPL MVNVTKLYPK
501: SDTSVFEVFG RVYSGTLQTG QSVRVLGEGY SPEDEEDMTV KEVTKLWIYQ ARYRVSVSSA PPGSWVLIEG VDASIMKTAT LCNESYEEDV YIFRALQFNT
601: LPVVKTATEP LNPSELPKMV EGLRKISKSY PLAITKVEES GEHTILGTGE LYLDSIMKDL RELYSEVEVK VADPVVSFCE TVVESSSMKC FAETPNKKNK
701: ITMIAEPLDR GLAEDIENGV VSIDWNRKQL GDFFKTKYDW DLLAARSIWA FGPDKQGPNI LLDDTLPTEV DKNLMMAVKD SIVQGFQWGA REGPLCDEPI
801: RNVKFKIVDA WIAPEPLHRG SGQMIPTARR VAYSSFLMAT PRLMEPVYYV EIQTPIDCVT AIYTVLSRRR GHVTSDVPQP GTPAYIVKAF LPVIESFGFE
901: TDLRYHTQGQ AFCVSVFDHW AIVPGDPLDK SILLRPLEPA PIQHLAREFM VKTRRRKGMS EDVSGNKFFD EAMMVELAQQ TGDLHLQMM
001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI
Arabidopsis Description
CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.