Factsheet for Zm00001d046549_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90029	Sorghum	cytosol	98.57	96.98
Os06t0608300-01	Rice	nucleus	94.48	92.78
TraesCS7A01G380300.1	Wheat	nucleus	92.85	91.45
TraesCS7D01G376800.1	Wheat	cytosol	92.75	91.35
TraesCS7B01G282300.1	Wheat	cytosol	92.75	91.35
HORVU7Hr1G090710.6	Barley	plastid	89.89	88.89
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	83.66	84.35
CDY70689	Canola	cytosol	46.07	83.36
CDY71233	Canola	mitochondrion, nucleus	47.5	83.33
Solyc07g007210.2.1	Tomato	nucleus	76.51	80.97
CDY15566	Canola	cytosol	68.85	80.91
VIT_11s0118g00720.t01	Wine grape	nucleus	81.1	80.36
KRH20245	Soybean	nucleus	79.88	79.31
KRH03566	Soybean	nucleus	79.98	79.25
PGSC0003DMT400078978	Potato	cytosol	79.06	78.42
Bra030642.1-P	Field mustard	cytosol	78.14	77.51
CDY09982	Canola	nucleus	78.24	77.45
Bra024798.1-P	Field mustard	cytosol	77.63	77.24
AT1G06220.2	Thale cress	cytosol	77.43	76.8
AT5G25230.1	Thale cress	cytosol	75.79	76.26
CDY69302	Canola	cytosol	22.27	68.34
Zm00001d012770_P001	Maize	plastid	33.09	38.43
Zm00001d034773_P001	Maize	cytosol	33.09	38.43
Zm00001d034776_P001	Maize	cytosol	33.09	38.43
Zm00001d034771_P002	Maize	cytosol	32.99	38.32
Zm00001d020342_P001	Maize	mitochondrion	14.91	36.59
Zm00001d033505_P001	Maize	cytosol	25.54	23.95
Zm00001d025948_P001	Maize	plastid	16.65	21.22
Zm00001d002822_P001	Maize	plastid	16.45	20.94
Zm00001d034826_P001	Maize	mitochondrion, plastid	14.71	19.12
Zm00001d015929_P002	Maize	plastid	11.64	16.99
Zm00001d043494_P005	Maize	mitochondrion	12.36	16.31
Zm00001d053861_P005	Maize	plastid	11.13	16.22
Zm00001d000213_P001	Maize	mitochondrion	11.24	16.18

Protein Annotations

MapMan:16.4.1.4.2	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	UniProt:A0A1D6P3B9	ProteinID:AQL04492.1	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTUD2_N
InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0016787	GO:GO:0019013
GO:GO:0030529	InterPro:IPR000795	InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679
PFAM:PF03144	PFAM:PF03764	PFAM:PF16004	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF6	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	InterPro:U5-116kDa_C	UniParc:UPI0008441472	EnsemblPlantsGene:Zm00001d046549	EnsemblPlants:Zm00001d046549_P002
EnsemblPlants:Zm00001d046549_T002	SEG:seg	:	:	:	:

Description

110 kDa U5 small nuclear ribonucleoprotein component CLO

Coordinates

chr9:-:95423390..95429102

Molecular Weight (calculated)

108392.0 Da

IEP (calculated)

5.032

GRAVY (calculated)

-0.175

Length

979 amino acids

Sequence
(BLAST)

001: MDDSLYDEFG NYIGPELADS DADDDSDAAG ASPSSTASRS PSPAARSPSG SPSRPAALMD VDEDEGDPSQ QAVVLAEDKK YYPTAEEVYG PGVEALVMDE
101: DEQPLEMPII APPRVVKFEV GTRAAATSTY ASTDFLLGLA GNPALVRNVT LVGHLQHGKT VFMDMLVEQT HEVDTFDSEG ERHVRFTDTR VDEQERQVSI
201: KAVPMSLVLE GGNGKSYLCN IMDTPGHVNF SDEMTAALRL ADGAVLIVDA AEGVMVNTER AIRHAIQERL PIVVVINKVD RLITELKLPP NDAYFKLRHT
301: LEAINDLISS CSTTVGGTQL VDPIAGNVCF ASGAAGWSFT LQSFAHLYLK IHGVQFDHEK FASRLWGDLY FHPDSRTFKK KPPKEGANRS FVEFILEPLY
401: KIYSLVVGEQ KGNVESKLAE LGVTLSNAAY KLNVRPLLRL ACRSIFGTGT GFTDMLVKHI PSVKDAAARK IDHIYTGPQD SSIVDAMKKC DPNGPLMVNV
501: TKLYPKSDCS VFDVFGRVYS GTIQTGQTVR VLGEGYSPDD EEDMTVKEVT KLWVYQARYR VAISKAPAGS WVLIEGVDAS IMKTATICPM NIDEDVYIFR
601: PLRFNTLSVV KIAAEPLNPS ELPKMVEGLR KISKSYPLAI TKVEESGEHT ILGTGELYLD SIMKDLRELY SEVEVKVADP VVTFCETVVD TSSMKCFAET
701: PNKRNKITML AEPLEKGLAE DIENGLVSLD SRQKEITDFF RQRYQWDVLA ARSIWAFGPD KQNLLNAVKD SIVQGFQWGA REGPLCDEPI RNVKFKILNA
801: NIAPEPLHRG GGQIIPTARR VVYSAFLMAT PRLMEPVYYV EIQTPIDCVS AIYTVLSRRR GHVTADVPKP GTPIYIVKAF LPVIESFGFE TDLRYHTQGQ
901: AFCLSVFDHW AIVPGDPLDK SIVLRPLEPA PMQHLAREFM VKTRRRKGMS EDVSINKFFD EAMMNELAQQ AADIHLQMM

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.