Factsheet for Zm00001d053861_P005

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84405	Sorghum	plastid	96.28	96.14
HORVU6Hr1G025120.1	Barley	cytosol	14.73	91.67
TraesCS6D01G120800.1	Wheat	plastid	88.39	88.66
TraesCS6B01G159200.1	Wheat	plastid	88.39	88.66
TraesCS6A01G130900.1	Wheat	plastid	87.8	88.06
GSMUA_Achr3P07220_001	Banana	cytosol, nucleus, plastid	73.81	87.94
HORVU6Hr1G025110.1	Barley	plastid	66.37	83.52
VIT_07s0031g03050.t01	Wine grape	plastid	80.95	80.0
KRH63332	Soybean	cytosol	31.7	78.6
PGSC0003DMT400070154	Potato	plastid	79.17	78.01
Solyc04g015450.2.1	Tomato	nucleus	79.02	77.97
CDY44781	Canola	plastid	77.98	77.63
KRH53996	Soybean	plasma membrane	79.32	77.58
AT5G08650.1	Thale cress	plastid	78.42	77.39
CDY40739	Canola	plastid	78.27	76.9
Bra028651.1-P	Field mustard	plastid	78.12	76.75
KRH63330	Soybean	cytosol, plasma membrane	29.61	73.98
KRH63943	Soybean	plastid	78.72	70.53
Zm00001d000213_P001	Maize	mitochondrion	46.43	45.88
Zm00001d015929_P002	Maize	plastid	22.62	22.65
Zm00001d043494_P005	Maize	mitochondrion	23.66	21.43
Zm00001d034826_P001	Maize	mitochondrion, plastid	18.9	16.87
Zm00001d025948_P001	Maize	plastid	18.15	15.89
Zm00001d002822_P001	Maize	plastid	17.86	15.6
Zm00001d012770_P001	Maize	plastid	18.75	14.95
Zm00001d034771_P002	Maize	cytosol	18.75	14.95
Zm00001d034773_P001	Maize	cytosol	18.75	14.95
Zm00001d034776_P001	Maize	cytosol	18.75	14.95
Zm00001d020342_P001	Maize	mitochondrion	7.44	12.53
Zm00001d033505_P001	Maize	cytosol	17.86	11.49
Zm00001d046549_P002	Maize	cytosol	16.22	11.13

Protein Annotations

EntrezGene:103654911	Gene3D:2.40.30.10	Gene3D:3.30.70.2570	Gene3D:3.30.70.3380	Gene3D:3.30.70.870	Gene3D:3.40.50.300
MapMan:35.1	ProteinID:AQK60544.1	ProteinID:AQK60545.1	ncoils:Coil	InterPro:EF-4	InterPro:EFG_III/V
InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0045727	InterPro:GUFP	InterPro:G_TR_CS	InterPro:IPR000795
InterPro:IPR038363	UniProt:K7UFR2	InterPro:LepA_CTD	InterPro:LepA_C_sf	InterPro:LepA_IV	HAMAP:MF_00071
HAMAP:MF_03138	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF06421
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43512	PANTHER:PTHR43512:SF1	SMART:SM00838
SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
TIGRFAMs:TIGR01393	InterPro:Transl_B-barrel_sf	UniParc:UPI00022187C3	EnsemblPlantsGene:Zm00001d053861	EnsemblPlants:Zm00001d053861_P005	EnsemblPlants:Zm00001d053861_T005
SEG:seg	:	:	:	:	:

Description

Putative translation elongation factor family protein

Coordinates

chr4:+:242512415..242522531

Molecular Weight (calculated)

74552.4 Da

IEP (calculated)

7.169

GRAVY (calculated)

-0.203

Length

672 amino acids

Sequence
(BLAST)

001: MATATASRLA VLAPRPSRPA PGRRRHAPAT GRGPPLPRSL YAAPRGRVLC LAAPAPAAAS TTDAGQDRLQ KVPISNIRNF CIIAHIDHGK STLADKLLEL
101: TGTVQKREMK EQFLDNMDLE RERGITIKLQ AARMRYVMNN EPYCLNLIDT PGHVDFSYEV SRSLAACEGA LLVVDASQGV EAQTLANVYL ALENNLEIIP
201: VLNKIDLPGA EPDRVAQEIE EIIGLDCRDA IRCSAKEGIG ITEILDALVT KIPPPKDTSK DPLRALIFDS YYDPYRGVIV YFRVIDGSMK KGDKICFMAN
301: GKEYVAEEIG VLSPNQMQVS ELYAGEVGYL SASIRSVADA RVGDTITHYS KKAHHALPGY SEATPMVFCG LFPIDADQFE ELREALEKLQ LNDAALKFEP
401: ESSSAMGFGF RCGFLGLLHM EIVQERLERE YNLNLIITAP SVVYRVNCAD GETVECSNPS LLPEPGKRRS IEEPYVKIEM LTPKDYIGSI MELTQDRRGE
501: FKEMNFITES RAKLIYELPL AEMVGDFFDQ LKSRSKGYAS MEYSVVGYRE SQLVKLDIQI NGDPVEALST IVHRDKAYAV GRALTQKLKE LIPRQMFRVP
601: IQACIGTKVI ASEALSAIRK DVLSKCYGGD ISRKKKLLKK QAEGKKRMKA IGRVDVPQEA FMAVLRLEKE VL

Best Arabidopsis Sequence Match ( AT5G08650.1 )
(BLAST)

001: MAMASAMDLS SPPTFFLSGT STSSPSLRRL SSISVSGFRR HSNRKLQILC QATAGTEPQS GLSVSGSKLA ARSGQDRLLK VPISNIRNFS IIAHIDHGKS
101: TLADKLLQVT GTVQNRDMKE QFLDNMDLER ERGITIKLQA ARMRYVYEDT PFCLNLIDTP GHVDFSYEVS RSLAACEGAL LVVDASQGVE AQTLANVYLA
201: LENNLEIIPV LNKIDLPGAE PEKVLREIEE VIGLDCSKAI FCSAKEGIGI TEILDAIVQR IPAPLDTAGK PLRALIFDSY YDPYRGVIVY FRVIDGKVKK
301: GDRIFFMASG KDYFADEVGV LSPNQIQVDE LYAGEVGYIA ASVRSVADAR VGDTITHYSR KAESSLPGYE EATPMVFCGL FPVDADQFPD LRDALEKLQL
401: NDAALKFEPE TSSAMGFGFR CGFLGLLHME IVQERLEREY NLNLITTAPS VVYRVNSVNG DTTLCSNPSR LPDPGQRKSV EEPYVKIELL TPKDYIGALM
501: ELAQERRGEF KEMKYIAENR ASILYELPLA EMVGDFFDQL KSRTKGYASM EYSVIGYRES DLIKLDILIN AEMVEPLSTI VHRDKAYSVG RALTQKLKEL
601: IPRQMFKVPI QACIGSKVIA SEALSAIRKD VLAKCYGGDI SRKKKLLKKQ AAGKKRMKAI GRVDVPQEAF MAVLKLEREV L

Arabidopsis Description

Translation factor GUF1 homolog, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178USI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.