Factsheet for Zm00001d043494_P005

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01486	Sorghum	mitochondrion	87.87	96.88
Os01t0752700-01	Rice	mitochondrion	83.29	91.83
TraesCS3D01G291300.1	Wheat	mitochondrion	80.32	88.56
TraesCS3A01G291600.1	Wheat	mitochondrion	80.19	88.41
TraesCS3B01G326200.1	Wheat	mitochondrion	80.19	88.41
HORVU3Hr1G072230.1	Barley	plastid	79.65	85.04
GSMUA_Achr8P27160_001	Banana	mitochondrion	72.1	79.85
VIT_12s0028g02640.t01	Wine grape	mitochondrion, plastid	71.97	79.46
KRH55837	Soybean	plastid	71.02	78.66
CDX84803	Canola	mitochondrion	65.77	78.21
KRH25682	Soybean	plastid	70.35	77.91
Bra022824.1-P	Field mustard	mitochondrion	65.9	77.5
CDY19061	Canola	mitochondrion	68.73	76.23
CDY54484	Canola	mitochondrion	68.6	76.08
AT2G31060.3	Thale cress	mitochondrion	68.6	75.86
Bra021694.1-P	Field mustard	mitochondrion	66.44	75.61
Solyc07g053470.2.1	Tomato	mitochondrion	67.25	74.92
PGSC0003DMT400024321	Potato	mitochondrion	67.25	74.92
Zm00001d015929_P002	Maize	plastid	35.44	39.2
Zm00001d053861_P005	Maize	plastid	21.43	23.66
Zm00001d000213_P001	Maize	mitochondrion	20.08	21.91
Zm00001d012770_P001	Maize	plastid	19.0	16.73
Zm00001d034773_P001	Maize	cytosol	19.0	16.73
Zm00001d034776_P001	Maize	cytosol	19.0	16.73
Zm00001d034771_P002	Maize	cytosol	18.87	16.61
Zm00001d034826_P001	Maize	mitochondrion, plastid	16.85	16.6
Zm00001d025948_P001	Maize	plastid	16.85	16.28
Zm00001d002822_P001	Maize	plastid	16.71	16.12
Zm00001d033505_P001	Maize	cytosol	17.79	12.64
Zm00001d046549_P002	Maize	cytosol	16.31	12.36
Zm00001d020342_P001	Maize	mitochondrion	5.66	10.53

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.40.50.250	Gene3D:3.30.70.240	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6NCM5
InterPro:EFG_III/V	InterPro:EFG_V-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	ProteinID:ONM38254.1	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF00679	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF8
SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
TIGRFAMs:TIGR01394	InterPro:Transl_B-barrel_sf	InterPro:TypA_GTP-bd	UniParc:UPI000844D186	EnsemblPlantsGene:Zm00001d043494	EnsemblPlants:Zm00001d043494_P005
EnsemblPlants:Zm00001d043494_T005	SEG:seg	:	:	:	:

Description

elongation factor family protein

Coordinates

chr3:+:201751547..201768426

Molecular Weight (calculated)

80938.8 Da

IEP (calculated)

8.673

GRAVY (calculated)

-0.060

Length

742 amino acids

Sequence
(BLAST)

001: MAAALLLRSL RPSVSRAHIH LLSHASSPTA LGSPLLPRLY SSAAASTAAS PVFTPGGVMD PSRIRNVAVI AHVDHGKTTL MDRLLRQCGA DIPHERAMDS
101: ISLERERGIT IASKVTSVSW KENELNMVDT PGHADFGGEV ERVVGMVEGA VLVVDAGEGP LAQTKFVLSK ALKYGLRPIL LLNKVDRPSV SEETCDEVES
201: LVFDLFANLG ATEEQLDFPV LYASAKEGWA SLTFTKSPPD NAKNMSSLLD SIVRHVPSPK ADLEAPFQML VSMMERDFYL GRILTGRVRS GVVRVGDKVH
301: GLRSTDDGVH KIEDGKVVKL MKKKGTNMVT VEAAGAGDII SMAGLAAPAI GHTVANSEIL SALPTIELDP PTISMTFGVN DSPLAGRDGT HLREVRFLVP
401: MIPYSHHVNQ MRYKGTQKTT ADTALLSIIL QLTGAKIGNR LMAEAETNLA INVLPGPLSE SYEVQGRGEL QLGILIENMR REGFELSVSP PKVMYKTERG
501: ERLEPIEEVT VEVGEEHVGF VLETITHRKG EVVDMGPVPG TTGRTRIFMT CPSRGLVGVK GIFSSFTRGT GFMHRAFQAY AKYRGPLGSV RKGVLISVGK
601: GLITSHALMS LEARGILFVS PGMEAYEGMI VGEHSRDSDL EVNPVRTKEL TNIRAPGKDE NVRLSPPRLM SLEEAIGYVA ADELIEASIM FLILERTLQK
701: FQLLILFLSE IRYPLVTPKV VRLRKKYLDS TKRKMMKNKP MN

Best Arabidopsis Sequence Match ( AT2G31060.2 )
(BLAST)

001: MAGPLLRSLW SNTTRRSFSS HSSPSKFGYS LSSLRSFSAA TASTAAAGAP NSSLDPNRLR NVAVIAHVDH GKTTLMDRLL RQCGADIPHE RAMDSINLER
101: ERGITISSKV TSIFWKDNEL NMVDTPGHAD FGGEVERVVG MVEGAILVVD AGEGPLAQTK FVLAKALKYG LRPILLLNKV DRPSVTEERC DEVESLVFDL
201: FANCGATEEQ LDFPVLYASA KEGWASSTYT KDPPVDAKNM ADLLDAVVRH VQPPKANLDE PFLMLVSMME KDFYLGRILT GRVTSGVVRV GDRVNGLRKT
301: DSGSEKIEEA KVVKLMKKKG TTIVSIDAAG AGDIICMAGL TAPSIGHTVA SAEVTTALPT VELDPPTISM TFGVNDSPLA GQDGTHLTGG RIGDRLMAEA
401: ETNLAINVIP GLSESYEVQG RGELQLGILI ENMRREGFEL SVSPPKVMYK TEKGQKLEPI EEVTIEINDE HVGLVMEALS HRRAEVIDMG PVPGNEGRTR
501: LSLTCPSRGL VGYRCVFSSD TRGTGFMHRA FLTYEKYRGP LGNVRKGVLV SMARGTITAH SLMSLEARGI LFVSPGLDSY DGMIIGEHSR ETDLDLNPVK
601: AKELTNIRSA GKDENVKLSP PRLMTLEEAI GYVASDELIE VTPKTIRLRK RCLDVNKRKS QSKRAKD

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4IPW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.