CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25682	Soybean	plastid	96.87	96.87
VIT_12s0028g02640.t01	Wine grape	mitochondrion, plastid	84.93	84.67
CDX84803	Canola	mitochondrion	78.06	83.81
Bra022824.1-P	Field mustard	mitochondrion	78.66	83.52
CDY19061	Canola	mitochondrion	82.84	82.96
CDY54484	Canola	mitochondrion	82.84	82.96
AT2G31060.3	Thale cress	mitochondrion	82.69	82.56
PGSC0003DMT400024321	Potato	mitochondrion	81.49	81.98
Bra021694.1-P	Field mustard	mitochondrion	79.7	81.9
Solyc07g053470.2.1	Tomato	mitochondrion	81.34	81.83
GSMUA_Achr8P27160_001	Banana	mitochondrion	79.85	79.85
EES01486	Sorghum	mitochondrion	78.21	77.86
Os01t0752700-01	Rice	mitochondrion	77.91	77.56
TraesCS3D01G291300.1	Wheat	mitochondrion	76.87	76.52
TraesCS3B01G326200.1	Wheat	mitochondrion	76.87	76.52
TraesCS3A01G291600.1	Wheat	mitochondrion	76.72	76.37
HORVU3Hr1G072230.1	Barley	plastid	76.57	73.81
Zm00001d043494_P005	Maize	mitochondrion	78.66	71.02
KRH71976	Soybean	nucleus	38.66	38.31
KRH33159	Soybean	nucleus	38.51	37.94
KRH75280	Soybean	mitochondrion	5.52	28.03
KRH40434	Soybean	mitochondrion	22.84	22.67
KRH53996	Soybean	plasma membrane	22.84	22.27
KRH63943	Soybean	plastid	22.99	20.53
KRH63330	Soybean	cytosol, plasma membrane	7.46	18.59
KRH40894	Soybean	cytosol	9.55	18.5
KRG88956	Soybean	mitochondrion	18.81	18.08
KRH75282	Soybean	cytosol	4.93	16.92
KRH43761	Soybean	cytosol, nucleus, plastid	4.93	16.5
KRH13692	Soybean	cytosol, mitochondrion	17.46	16.36
KRH04069	Soybean	nucleus, plastid	19.1	16.26
KRH63332	Soybean	cytosol	6.57	16.24
KRH57341	Soybean	nucleus, plastid	18.81	16.15
KRH43759	Soybean	nucleus	19.55	15.54
KRH13696	Soybean	nucleus	19.55	15.54
KRH13693	Soybean	mitochondrion	18.96	15.36
KRH00796	Soybean	nucleus	14.48	14.76
KRH75283	Soybean	cytosol, mitochondrion	9.1	13.9
KRG94823	Soybean	cytosol	19.4	12.72
KRH20245	Soybean	nucleus	18.06	12.27
KRH03566	Soybean	nucleus	17.91	12.15

Protein Annotations

EntrezGene:100789218	Gene3D:2.40.30.10	Gene3D:2.40.50.250	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
MapMan:35.1	EMBL:ACUP02004063	InterPro:BipA_V	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2
EnsemblPlantsGene:GLYMA_06G285200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS	UniProt:I1KEV1	InterPro:IPR000795	EnsemblPlants:KRH55837
ProteinID:KRH55837	ProteinID:KRH55837.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF8	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01394
InterPro:Transl_B-barrel_sf	InterPro:TypA_GTP-bd	UniParc:UPI000233A303	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:47380074..47390328

Molecular Weight (calculated)

72573.5 Da

IEP (calculated)

6.803

GRAVY (calculated)

-0.153

Length

670 amino acids

Sequence
(BLAST)

001: MVGPIIRSLW SSTRKSFSSS SSSFSPSPPL SHSRFFSRAF AAAPATAPAA ATTASSLDPS RLRNLAVIAH VDHGKTTLMD RLLRQCGADL PHERAMDSIS
101: LERERGITIS SKVTSVSWKE NELNMVDTPG HADFGGEVER VVGMVEGAIL VVDAGEGPLA QTKFVLAKAL KYGLRPILLL NKVDRPAVSE ETCDEVESLV
201: FDLFANLGAT EEQLDFPVLY ASAKEGWAST TFTKDPPADA RNMSQLLDAV VRHVPPPNAN IDAPFQMLVS MMEKDFYLGR ILTGRIFSGV VRVGDKVHGL
301: RNKDSGAEKI EDGKVVKLMK KKGTNMVLTD CAGAGDIISI AGLSSPAIGH TVATVEIMSA LPTVELDPPT ISMTFGVNDS PLAGRDGTHL TGGRIGDRLM
401: AEAETNLAIN VLPGLSESFE VQGRGELQLG ILIENMRREG FELSVSPPKV MYKTESGQKL EPVEEVTIEV NDEHVGLIME ALSHRRAEVT DMGPVSGTVG
501: RTRLCLTCPS RGLVGYRSVF SSDTRGTGFM HRAFHAYEKF RGPLGNVRKG VLVSMGFGTI TAHALMSLEA RGTLFVTPGM EAYDGMIVGE HSRDTDLDVN
601: PVRAKELTNI RAATKDDNVK LTPPRLMTLE EAIGYVASDE LIEVTPKSIR LRKKYLDVNK RKAMSKKPKE

Best Arabidopsis Sequence Match ( AT2G31060.2 )
(BLAST)

001: MAGPLLRSLW SNTTRRSFSS HSSPSKFGYS LSSLRSFSAA TASTAAAGAP NSSLDPNRLR NVAVIAHVDH GKTTLMDRLL RQCGADIPHE RAMDSINLER
101: ERGITISSKV TSIFWKDNEL NMVDTPGHAD FGGEVERVVG MVEGAILVVD AGEGPLAQTK FVLAKALKYG LRPILLLNKV DRPSVTEERC DEVESLVFDL
201: FANCGATEEQ LDFPVLYASA KEGWASSTYT KDPPVDAKNM ADLLDAVVRH VQPPKANLDE PFLMLVSMME KDFYLGRILT GRVTSGVVRV GDRVNGLRKT
301: DSGSEKIEEA KVVKLMKKKG TTIVSIDAAG AGDIICMAGL TAPSIGHTVA SAEVTTALPT VELDPPTISM TFGVNDSPLA GQDGTHLTGG RIGDRLMAEA
401: ETNLAINVIP GLSESYEVQG RGELQLGILI ENMRREGFEL SVSPPKVMYK TEKGQKLEPI EEVTIEINDE HVGLVMEALS HRRAEVIDMG PVPGNEGRTR
501: LSLTCPSRGL VGYRCVFSSD TRGTGFMHRA FLTYEKYRGP LGNVRKGVLV SMARGTITAH SLMSLEARGI LFVSPGLDSY DGMIIGEHSR ETDLDLNPVK
601: AKELTNIRSA GKDENVKLSP PRLMTLEEAI GYVASDELIE VTPKTIRLRK RCLDVNKRKS QSKRAKD

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4IPW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.