CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88956	Soybean	mitochondrion	85.88	54.09
KRH57341	Soybean	nucleus, plastid	40.77	22.95
KRH04069	Soybean	nucleus, plastid	40.09	22.36
KRH63330	Soybean	cytosol, plasma membrane	10.25	16.73
KRH63332	Soybean	cytosol	7.97	12.92
KRH13696	Soybean	nucleus	22.1	11.51
KRH43759	Soybean	nucleus	22.1	11.51
KRH13692	Soybean	cytosol, mitochondrion	18.68	11.47
KRH13693	Soybean	mitochondrion	19.82	10.52
KRH20245	Soybean	nucleus	21.64	9.63
KRH03566	Soybean	nucleus	21.64	9.62
KRH53996	Soybean	plasma membrane	14.58	9.32
KRH25682	Soybean	plastid	13.9	9.1
KRH55837	Soybean	plastid	13.9	9.1
KRH40434	Soybean	mitochondrion	13.67	8.89
KRG94823	Soybean	cytosol	20.05	8.61
KRH71976	Soybean	nucleus	13.21	8.58
KRH33159	Soybean	nucleus	13.21	8.53
KRH63943	Soybean	plastid	14.35	8.4
CDY23967	Canola	cytosol	1.59	6.03
KRH00796	Soybean	nucleus	6.15	4.11
KRH40894	Soybean	cytosol	0.91	1.16
KRH75282	Soybean	cytosol	0.46	1.03
KRH43761	Soybean	cytosol, nucleus, plastid	0.46	1.0
KRH75280	Soybean	mitochondrion	0.0	0.0

Protein Annotations

MapMan:17.7.4.3	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
EMBL:ACUP02000279	InterPro:EFG_III	InterPro:EFG_III/V	InterPro:EFG_V	InterPro:EFG_V-like	InterPro:EFTu-like_2
EnsemblPlantsGene:GLYMA_01G075400	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0070125
UniProt:I1J6F0	InterPro:IPR014721	EnsemblPlants:KRH75283	ProteinID:KRH75283	ProteinID:KRH75283.1	PFAM:PF00679
PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PANTHER:PTHR43636	PANTHER:PTHR43636:SF2	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF54211	SUPFAM:SSF54980
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI0002968A50	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:16872442..16890182

Molecular Weight (calculated)

48088.5 Da

IEP (calculated)

6.078

GRAVY (calculated)

-0.266

Length

439 amino acids

Sequence
(BLAST)

001: MGSAFKNKGV QPLLDGVISY LPCPIEVSNY ALDQAKNEDK VELRGSPDGP LVALAFKLEE GRFGQLTYLR IYEGVIRKGD FIINVNTGKK IKVPRLVRMH
101: SDEMEDIQEA HAGQIVAVFG VECASGDTFT DGSVKYTMTS MNVPEPVMSL AVQPVSKDSG GQFSKALNRF QKEDPTFRVG LDPESGQTII SGMGELHLDI
201: YVERIRREYK VDASVGKPRV NFRETVTQRA DFDYLHKKQS GGQGQYGRVI GYIEPLPAGS STKFAFENLL VGQAIPSNFI PAIEKGFKEA ANSGALIGHP
301: VENLRVVLTD GAAHAVDSSE LAFKLASIYA FRQCYAASRP VILEPVMLVE LKVPTEFQGA VAGDINKRKG VIVGNDQEGD DSVITAHVPL NNMFGYSTAL
401: RSMTQGKGEF TMEYKEHLPV SHDVQTQLIN TYKGNKEGE

Best Arabidopsis Sequence Match ( AT1G45332.1 )
(BLAST)

001: MARFPTSPAP NRLLRLFSSN KRSSSPTAAL LTGDFQLIRH FSAGTAARVA KDEKEPWWKE SMDKLRNIGI SAHIDSGKTT LTERVLFYTG RIHEIHEVRG
101: RDGVGAKMDS MDLEREKGIT IQSAATYCTW KDYKVNIIDT PGHVDFTIEV ERALRVLDGA ILVLCSVGGV QSQSITVDRQ MRRYEVPRVA FINKLDRMGA
201: DPWKVLNQAR AKLRHHSAAV QVPIGLEENF QGLIDLIHVK AYFFHGSSGE NVVAGDIPAD MEGLVAEKRR ELIETVSEVD DVLAEKFLND EPVSASELEE
301: AIRRATIAQT FVPVFMGSAF KNKGVQPLLD GVVSFLPSPN EVNNYALDQN NNEERVTLTG SPDGPLVALA FKLEEGRFGQ LTYLRVYEGV IKKGDFIINV
401: NTGKRIKVPR LVRMHSNDME DIQEAHAGQI VAVFGIECAS GDTFTDGSVK YTMTSMNVPE PVMSLAVQPV SKDSGGQFSK ALNRFQKEDP TFRVGLDPES
501: GQTIISGMGE LHLDIYVERM RREYKVDATV GKPRVNFRET ITQRAEFDYL HKKQSGGAGQ YGRVTGYVEP LPPGSKEKFE FENMIVGQAI PSGFIPAIEK
601: GFKEAANSGS LIGHPVENLR IVLTDGASHA VDSSELAFKM AAIYAFRLCY TAARPVILEP VMLVELKVPT EFQGTVAGDI NKRKGIIVGN DQEGDDSVIT
701: ANVPLNNMFG YSTSLRSMTQ GKGEFTMEYK EHSAVSNEVQ AQLVNAYSAS KATE

Arabidopsis Description

MEFG1Elongation factor G-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C641]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.