Factsheet for Zm00001d012770_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420
plastid: 23198870
plasma membrane: 23353019
mitochondrion: 27297264

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034776_P001	Maize	cytosol	99.76	99.76
Zm00001d034773_P001	Maize	cytosol	99.76	99.76
Zm00001d034771_P002	Maize	cytosol	99.53	99.53
KXG37183	Sorghum	cytosol	99.41	99.41
KXG37185	Sorghum	cytosol	99.41	99.41
OQU75622	Sorghum	cytosol	39.74	98.82
GSMUA_Achr10P...	Banana	cytosol	86.6	94.68
KRH43759	Soybean	nucleus	93.36	93.36
KRH13696	Soybean	nucleus	93.24	93.24
Solyc08g062920.2.1	Tomato	nucleus, plastid	91.46	93.12
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	84.93	92.99
CDY49975	Canola	cytosol	43.89	92.73
VIT_19s0027g00760.t01	Wine grape	cytosol	93.48	92.38
CDX90241	Canola	cytosol, extracellular	86.6	92.29
Bra010782.1-P	Field mustard	cytosol	92.17	92.17
AT1G56070.2	Thale cress	cytosol	91.93	91.93
CDY05533	Canola	cytosol	70.94	91.58
CDY70516	Canola	cytosol	55.28	91.55
GSMUA_Achr4P01020_001	Banana	cytosol	94.19	91.37
Bra010781.1-P	Field mustard	cytosol	59.79	91.3
CDY32072	Canola	cytosol	69.99	91.19
Os01t0742200-01	Rice	cytosol, nucleus	88.97	90.8
CDY49974	Canola	nucleus	9.02	89.41
AT3G12915.2	Thale cress	cytosol	83.16	88.96
CDY24982	Canola	endoplasmic reticulum, vacuole	87.9	88.42
CDY70526	Canola	nucleus	8.9	88.24
CDY40423	Canola	cytosol	82.33	88.18
Bra017279.1-P	Field mustard	cytosol	91.81	88.15
Bra020542.1-P	Field mustard	cytosol	91.93	82.01
KRH43761	Soybean	cytosol, nucleus, plastid	18.27	77.0
KRH13693	Soybean	mitochondrion	75.21	76.66
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	39.74	76.48
Zm00001d020342_P001	Maize	mitochondrion	36.18	76.44
KRH13692	Soybean	cytosol, mitochondrion	60.74	71.61
CDY54261	Canola	nucleus	17.91	65.65
Zm00001d046549_P002	Maize	cytosol	38.43	33.09
Zm00001d033505_P001	Maize	cytosol	34.52	27.87
Zm00001d025948_P001	Maize	plastid	21.0	23.05
Zm00001d002822_P001	Maize	plastid	20.88	22.89
Zm00001d034826_P001	Maize	mitochondrion, plastid	19.1	21.38
Zm00001d043494_P005	Maize	mitochondrion	16.73	19.0
Zm00001d000213_P001	Maize	mitochondrion	15.3	18.97
Zm00001d015929_P002	Maize	plastid	14.95	18.78
Zm00001d053861_P005	Maize	plastid	14.95	18.75

Protein Annotations

EntrezGene:100272648	MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870
Gene3D:3.40.50.300	Gene3D:3.90.1430.10	ProteinID:AQL00678.1	ProteinID:AQL00679.1	InterPro:EFG_III/V	InterPro:EFG_V-like
InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR014721	UniProt:K7VQ65	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980
InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI0002220FA3
EnsemblPlantsGene:Zm00001d012770	EnsemblPlants:Zm00001d012770_P001	EnsemblPlants:Zm00001d012770_T001	:	:	:

Description

Putative translation elongation factor family protein

Coordinates

chr8:-:180488563..180493697

Molecular Weight (calculated)

93911.9 Da

IEP (calculated)

6.279

GRAVY (calculated)

-0.206

Length

843 amino acids

Sequence
(BLAST)

001: MVKFTAEELR AIMDKKNNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKNYK GERDGNQYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVE GEEAYQTFSR VIENANVIMA TYEDKLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVDESKM MERLWGENFF DPATKKWTTK NTGSPTCKRG FVQFCYEPIK QIIKTCMNDQ KEKLWPMLQK
301: LNVTMKADEK ELIGKALMKR VMQTWLPAST ALLEMMIFHL PSPAKAQKYR VENLYEGPLD DVYATAIRNC DPEGPLMLYV SKMIPASDKG RFFAFGRVFS
401: GKVATGMKVR IMGPNYVPGQ KKDLYVKSVQ RTVIWMGKKQ ESVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDACPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVLC TMEESGEHII AGAGELHLEI CLKDLQEDFM GGAEIIVSPP VVSFRETVLE KSCRTVMSKS PNKHNRLYME ARPLEEGLAE
601: AIDDGRIGPR DDPKVRSQIL SQEFGWDKDL AKKIWCFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGALAEE NMRGICFEVC DVVLHADAIH
701: RGGGQVIPTA RRVIYASQLT AKPRLLEPVY LVEIQAPENA LGGIYGVLNQ KRGHVFEEMQ RPGTPLYNIK AFLPVIESFG FSSQLRAATS GQAFPQCVFD
801: HWDMMGSDPL EAGSQAAQLV LDIRKRKGLK EQMTPLSEFE DKL

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.