Factsheet for GSMUA_Achr3P07220_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 2
nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G025120.1	Barley	cytosol	17.02	88.89
KRH63332	Soybean	cytosol	39.54	82.29
KRH63330	Soybean	cytosol, plasma membrane	37.41	78.44
Zm00001d053861_P005	Maize	plastid	87.94	73.81
VIT_07s0031g03050.t01	Wine grape	plastid	88.83	73.68
TraesCS6D01G120800.1	Wheat	plastid	87.41	73.58
TraesCS6B01G159200.1	Wheat	plastid	87.41	73.58
OQU84405	Sorghum	plastid	87.59	73.4
TraesCS6A01G130900.1	Wheat	plastid	87.06	73.28
CDY44781	Canola	plastid	86.7	72.44
KRH53996	Soybean	plasma membrane	87.94	72.2
Solyc04g015450.2.1	Tomato	nucleus	86.88	71.95
PGSC0003DMT400070154	Potato	plastid	86.88	71.85
Bra028651.1-P	Field mustard	plastid	86.7	71.49
CDY40739	Canola	plastid	86.7	71.49
AT5G08650.1	Thale cress	plastid	86.17	71.37
HORVU6Hr1G025110.1	Barley	plastid	63.65	67.23
KRH63943	Soybean	plastid	87.41	65.73
GSMUA_Achr10P...	Banana	mitochondrion	50.35	42.07
GSMUA_Achr5P14760_001	Banana	plastid	24.47	20.26
GSMUA_Achr8P27160_001	Banana	mitochondrion	23.4	19.7
GSMUA_Achr10P...	Banana	cytosol	19.33	15.73
GSMUA_Achr5P13570_001	Banana	mitochondrion	17.55	13.67
GSMUA_Achr10P...	Banana	cytosol	17.91	13.1
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	9.4	12.1
GSMUA_Achr4P01020_001	Banana	cytosol	18.62	12.08
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	16.84	9.78
GSMUA_Achr2P17400_001	Banana	cytosol	12.06	8.25

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.70.2570	Gene3D:3.30.70.3380	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
InterPro:EF-4	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005759	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787
GO:GO:0019538	GO:GO:0043022	GO:GO:0045727	EnsemblPlantsGene:GSMUA_Achr3G07220_001	EnsemblPlants:GSMUA_Achr3P07220_001	EnsemblPlants:GSMUA_Achr3T07220_001
InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR038363	InterPro:LepA_CTD	InterPro:LepA_C_sf	InterPro:LepA_IV
UniProt:M0SCI9	HAMAP:MF_00071	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF06421	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43512	PANTHER:PTHR43512:SF1
SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01393	InterPro:Transl_B-barrel_sf	UniParc:UPI000295F463	SEG:seg	:

Description

GTP-binding protein lepA [Source:GMGC_GENE;Acc:GSMUA_Achr3G07220_001]

Coordinates

chr3:+:4879698..4907076

Molecular Weight (calculated)

63001.2 Da

IEP (calculated)

4.887

GRAVY (calculated)

-0.155

Length

564 amino acids

Sequence
(BLAST)

001: MKEQFLDNMD LERERGITIK LQAARMRYVL DNVPYCLNLI DTPGHVDFSY EVSRSLAACE GALLVVDASQ GVEAQTLANV YLALENNLEI IPVLNKIDLP
101: GAEPDRVARE MEEIIGLDCS TAIQCSAKEG IGIAEILNSI VTRIPPPNDT SQSPLRALIF DSYYDPYRGV IVYFRVVDGS IRKGDKIYFM ASGKDYFADE
201: IGVLSPNQMQ VDELYVGEVG YLSASIRSVA DARVGDTITH FGRRAASSLP GYEEATPMVF CGLFPVDADQ FPELRDALEK LQLNDAALKF EPETSSAMGF
301: GFRCGFLGLL HMEIVQERLE REYNLTLITT APSVVYRVNC ANGDIIECSN PSLLPEPGKR RSIEEPFVKI EMLTPKEYIG SLMELGQERR GEFKEMNYIT
401: ENRASLIYEL PLAEMVGDFF DQLKSRTKGY ASMEYSFVGY RESDLVKLDV QINGEPVEPL STIVHKDKAY AVGRALTQKL KELIPRQMFK IPIQACVGSK
501: VIASESLSAI RKDVLSKCYG GDISRKKKLL KKQAEGKKRM KAVGKVEVPQ EAFMAVLRLE KEVM

Best Arabidopsis Sequence Match ( AT5G08650.1 )
(BLAST)

001: MAMASAMDLS SPPTFFLSGT STSSPSLRRL SSISVSGFRR HSNRKLQILC QATAGTEPQS GLSVSGSKLA ARSGQDRLLK VPISNIRNFS IIAHIDHGKS
101: TLADKLLQVT GTVQNRDMKE QFLDNMDLER ERGITIKLQA ARMRYVYEDT PFCLNLIDTP GHVDFSYEVS RSLAACEGAL LVVDASQGVE AQTLANVYLA
201: LENNLEIIPV LNKIDLPGAE PEKVLREIEE VIGLDCSKAI FCSAKEGIGI TEILDAIVQR IPAPLDTAGK PLRALIFDSY YDPYRGVIVY FRVIDGKVKK
301: GDRIFFMASG KDYFADEVGV LSPNQIQVDE LYAGEVGYIA ASVRSVADAR VGDTITHYSR KAESSLPGYE EATPMVFCGL FPVDADQFPD LRDALEKLQL
401: NDAALKFEPE TSSAMGFGFR CGFLGLLHME IVQERLEREY NLNLITTAPS VVYRVNSVNG DTTLCSNPSR LPDPGQRKSV EEPYVKIELL TPKDYIGALM
501: ELAQERRGEF KEMKYIAENR ASILYELPLA EMVGDFFDQL KSRTKGYASM EYSVIGYRES DLIKLDILIN AEMVEPLSTI VHRDKAYSVG RALTQKLKEL
601: IPRQMFKVPI QACIGSKVIA SEALSAIRKD VLAKCYGGDI SRKKKLLKKQ AAGKKRMKAI GRVDVPQEAF MAVLKLEREV L

Arabidopsis Description

Translation factor GUF1 homolog, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178USI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.