Factsheet for Solyc04g015450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070154	Potato	plastid	98.68	98.53
GSMUA_Achr3P07220_001	Banana	cytosol, nucleus, plastid	71.95	86.88
VIT_07s0031g03050.t01	Wine grape	plastid	82.38	82.5
KRH53996	Soybean	plasma membrane	81.94	81.22
CDY44781	Canola	plastid	79.88	80.59
HORVU6Hr1G025120.1	Barley	cytosol	12.78	80.56
CDY40739	Canola	plastid	80.18	79.82
AT5G08650.1	Thale cress	plastid	79.59	79.59
Bra028651.1-P	Field mustard	plastid	79.88	79.53
OQU84405	Sorghum	plastid	78.56	79.49
Zm00001d053861_P005	Maize	plastid	77.97	79.02
TraesCS6B01G159200.1	Wheat	plastid	76.51	77.76
TraesCS6D01G120800.1	Wheat	plastid	76.51	77.76
TraesCS6A01G130900.1	Wheat	plastid	76.21	77.46
KRH63943	Soybean	plastid	81.64	74.13
HORVU6Hr1G025110.1	Barley	plastid	57.56	73.41
Solyc03g058880.2.1	Tomato	mitochondrion	45.96	47.42
Solyc07g053470.2.1	Tomato	mitochondrion	24.52	25.08
Solyc03g058190.2.1	Tomato	plastid	22.61	22.92
Solyc01g090690.2.1	Tomato	plastid	18.94	16.97
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	17.33	15.32
Solyc08g079180.2.1	Tomato	plastid	17.62	15.25
Solyc08g062920.2.1	Tomato	nucleus, plastid	18.21	14.98
Solyc11g071770.1.1	Tomato	cytosol	18.5	12.3
Solyc07g007210.2.1	Tomato	nucleus	15.57	11.46

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.70.2570	Gene3D:3.30.70.3380	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
InterPro:EF-4	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0019904	GO:GO:0045727	InterPro:GUFP	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR038363
UniProt:K4BQ47	InterPro:LepA_CTD	InterPro:LepA_C_sf	InterPro:LepA_IV	HAMAP:MF_00071	HAMAP:MF_03138
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF06421	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43512	PANTHER:PTHR43512:SF1	SMART:SM00838	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	EnsemblPlantsGene:Solyc04g015450.2	EnsemblPlants:Solyc04g015450.2.1	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01393	InterPro:Transl_B-barrel_sf	UniParc:UPI0002766BBE	SEG:seg	:

Description

Translation factor GUF1 homolog, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4BQ47]

Coordinates

chr4:-:5642257..5658109

Molecular Weight (calculated)

76505.5 Da

IEP (calculated)

7.683

GRAVY (calculated)

-0.226

Length

681 amino acids

Sequence
(BLAST)

001: MATANFCRPK FIHHHHQHQN CFNLPTNLYF SQHLKSKRGD GAQSVRRRRQ RWRSSLRVDC QAAATDLEAT ARAGKDRLLK VPISNIRNFS IIAHIDHGKS
101: TLADKLLQMT GTVESRDMKE QFLDNMDLER ERGITIKLQA ARMRFIYENE PYCLNLIDTP GHVDFSYEVS RSLAACEGAL LVVDASQGVE AQTLANVYLA
201: LENNLEIIPV LNKIDLPGAD PARVCQEIEE IVGLDCSNAI YTSAKEGIGI SEILNAIVQR IPPPRATAER PLRALIFDSY YDPYRGVIVY FRVIDGTIKK
301: GDRVLFMASG KDYYADELGV LSPNQLQVDQ LYAGEVGFLS ASIRSVADAR VGDTITHFQR KAEQSLPGYK EATPMVFCGL FPVDADQFSE LRDALEKLQL
401: NDAALKFEPE TSSAMGFGFR CGFLGLLHME IVQERLEREY NLSLITTAPS VVYRVHCIDG DTVECSNPSL LPEPGKRRSI EEPFVKIELL TPKEYIGALM
501: ELAQDRRGIF KEMKYITENR ASIIYELPLA EMVGDFFDQL KSRSKGYASM EYNFIGYTES DLIKLDILIN GDRVEPLATI VHKDKAYSVG RALTQKLKEL
601: IPRQMFKVPI QATIGSKVIA SEAISAIRKD VLAKCYGGDI SRKKKLLKKQ AEGKKRMKAI GKVDVPQEAF MAVLKLEKEV L

Best Arabidopsis Sequence Match ( AT5G08650.1 )
(BLAST)

001: MAMASAMDLS SPPTFFLSGT STSSPSLRRL SSISVSGFRR HSNRKLQILC QATAGTEPQS GLSVSGSKLA ARSGQDRLLK VPISNIRNFS IIAHIDHGKS
101: TLADKLLQVT GTVQNRDMKE QFLDNMDLER ERGITIKLQA ARMRYVYEDT PFCLNLIDTP GHVDFSYEVS RSLAACEGAL LVVDASQGVE AQTLANVYLA
201: LENNLEIIPV LNKIDLPGAE PEKVLREIEE VIGLDCSKAI FCSAKEGIGI TEILDAIVQR IPAPLDTAGK PLRALIFDSY YDPYRGVIVY FRVIDGKVKK
301: GDRIFFMASG KDYFADEVGV LSPNQIQVDE LYAGEVGYIA ASVRSVADAR VGDTITHYSR KAESSLPGYE EATPMVFCGL FPVDADQFPD LRDALEKLQL
401: NDAALKFEPE TSSAMGFGFR CGFLGLLHME IVQERLEREY NLNLITTAPS VVYRVNSVNG DTTLCSNPSR LPDPGQRKSV EEPYVKIELL TPKDYIGALM
501: ELAQERRGEF KEMKYIAENR ASILYELPLA EMVGDFFDQL KSRTKGYASM EYSVIGYRES DLIKLDILIN AEMVEPLSTI VHRDKAYSVG RALTQKLKEL
601: IPRQMFKVPI QACIGSKVIA SEALSAIRKD VLAKCYGGDI SRKKKLLKKQ AAGKKRMKAI GRVDVPQEAF MAVLKLEREV L

Arabidopsis Description

Translation factor GUF1 homolog, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178USI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.