Factsheet for Solyc01g090690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066962	Potato	mitochondrion	98.82	98.82
GSMUA_Achr10P...	Banana	cytosol	77.89	85.43
VIT_15s0021g02450.t01	Wine grape	mitochondrion, plastid	83.82	85.39
KRG88956	Soybean	mitochondrion	77.37	84.36
AT2G45030.1	Thale cress	mitochondrion	81.97	82.63
AT1G45332.1	Thale cress	mitochondrion	81.97	82.63
CDY18957	Canola	plastid	81.05	81.48
Bra004884.1-P	Field mustard	plastid	80.92	81.46
CDX74705	Canola	plastid	80.66	81.19
Os03t0565500-01	Rice	mitochondrion	78.82	79.13
EER90530	Sorghum	mitochondrion, plastid	78.55	78.76
Zm00001d034826_P001	Maize	mitochondrion, plastid	77.63	78.35
TraesCS7B01G248200.1	Wheat	mitochondrion	77.5	77.7
HORVU7Hr1G082910.2	Barley	mitochondrion	77.5	77.7
TraesCS7A01G336600.4	Wheat	mitochondrion	75.0	73.08
TraesCS7D01G344300.4	Wheat	mitochondrion	75.0	73.08
Solyc08g079180.2.1	Tomato	plastid	41.97	40.53
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	19.21	18.96
Solyc04g015450.2.1	Tomato	nucleus	16.97	18.94
Solyc03g058190.2.1	Tomato	plastid	16.58	18.75
Solyc08g062920.2.1	Tomato	nucleus, plastid	20.0	18.36
Solyc07g053470.2.1	Tomato	mitochondrion	15.92	18.17
Solyc03g058880.2.1	Tomato	mitochondrion	15.26	17.58
Solyc07g007210.2.1	Tomato	nucleus	20.0	16.43
Solyc11g071770.1.1	Tomato	cytosol	20.66	15.33

Protein Annotations

MapMan:17.7.4.3	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
InterPro:EFG_III	InterPro:EFG_III/V	InterPro:EFG_V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0070125	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:IPR014721	UniProt:K4AZ10	HAMAP:MF_00054_B	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR43636	PANTHER:PTHR43636:SF2	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838
SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom
EnsemblPlantsGene:Solyc01g090690.2	EnsemblPlants:Solyc01g090690.2.1	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00484	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EFG/EF2	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI0002767E11	SEG:seg	:	:

Description

Elongation factor G, mitochondrial [Source:UniProtKB/TrEMBL;Acc:K4AZ10]

Coordinates

chr1:+:84327726..84338438

Molecular Weight (calculated)

84036.3 Da

IEP (calculated)

6.625

GRAVY (calculated)

-0.307

Length

760 amino acids

Sequence
(BLAST)

001: MARSARSSTT RLFYSLCSST KRTPLTPQHP PPTPVAALLA GNFQLRHYAA SSATARVREE KDAVWRESLE KVRNIGISAH IDSGKTTLTE RVLFYTGRIH
101: EIHEVRGKDG VGAKMDSMDL EREKGITIQS AATYCTWKDY QVNIIDTPGH VDFTIEVERA LRVLDGAILV LCSVGGVQSQ SITVDRQMRR YEVPRLAFIN
201: KLDRMGADPW KVLNQARAKL RHHSAAVQVP IGLEDDFKGL IDLVQSKAYY FHGSNGEKIV AEDIPADMEA IASEKRRELI EAVSEVDDKL AESFLNDEPI
301: SSADLEAAIR RATIARKFVP FFMGSAFKNK GVQTLLDGVL SYLPCPVEVS NYALDQTKDE EKVTLTGNPS GPLVALAFKL EEGRFGQLTY LRIYEGVIRK
401: GDFIINVNTG KKIKIPRLVR MHSNEMEDIQ EAHAGQIVAV FGVDCASGDT FTDGSVKYTM TSMNVPEPVM SLAVSPVSKD SGGQFSKALN RFQKEDPTFR
501: VGLDAESGET IISGMGELHL DIYVERIRRE YKVEAQVGKP RVNFRETITK RADFDYLHKK QSGGQGQYGR VIGYVEPLEP GSGSKFEFEN MLVGQTIPSN
601: YVPAIEKGFR EAANSGSLIG HPVENIRVVL TDGASHNVDS SELAFKLASI YAFRQCYTAA KPIILEPVML VDIKVPTEFQ GTVTGDINKR KGVIIGNDQE
701: GDDSVITANV PLNMMFGYST SLRSMTQGKG EFTMEYREHA PVSGDTQTQL VNAYKASKEN

Best Arabidopsis Sequence Match ( AT2G45030.1 )
(BLAST)

001: MARFPTSPAP NLLLRLFSSN KRASSPTAAL LTGDFHLIRH FSAGTAARAV KDEKEPWWKE SMDKLRNIGI SAHIDSGKTT LTERVLFYTG RIHEIHEVRG
101: RDGVGAKMDS MDLEREKGIT IQSAATYCTW KDYKVNIIDT PGHVDFTIEV ERALRVLDGA ILVLCSVGGV QSQSITVDRQ MRRYEVPRVA FINKLDRMGA
201: DPWKVLNQAR AKLRHHSAAV QVPIGLEENF QGLIDLIHVK AYFFHGSSGE NVVAGDIPAD MEGLVGDKRR ELIETVSEVD DVLAEKFLND EPVSAAELEE
301: AIRRATIAQK FVPVFMGSAF KNKGVQPLLD GVVSFLPSPN EVNNYALDQN NNEERVTLTG SPDGPLVALA FKLEEGRFGQ LTYLRVYEGV IKKGDFIINV
401: NTGKRIKVPR LVRMHSNDME DIQEAHAGQI VAVFGIECAS GDTFTDGSVK YTMTSMNVPE PVMSLAVQPV SKDSGGQFSK ALNRFQKEDP TFRVGLDPES
501: GQTIISGMGE LHLDIYVERM RREYKVDATV GKPRVNFRET ITQRAEFDYL HKKQSGGAGQ YGRVTGYVEP LPPGSKEKFE FENMIVGQAI PSGFIPAIEK
601: GFKEAANSGS LIGHPVENLR IVLTDGASHA VDSSELAFKM AAIYAFRLCY TAARPVILEP VMLVELKVPT EFQGTVAGDI NKRKGIIVGN DQEGDDSVIT
701: ANVPLNNMFG YSTSLRSMTQ GKGEFTMEYK EHSAVSNEVQ AQLVNAYSAS KATE

Arabidopsis Description

MEFG2Elongation factor G-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4IW10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.