CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034826_P001	Maize	mitochondrion, plastid	97.63	98.27
Os03t0565500-01	Rice	mitochondrion	93.4	93.53
TraesCS7B01G248200.1	Wheat	mitochondrion	91.03	91.03
HORVU7Hr1G082910.2	Barley	mitochondrion	91.03	91.03
GSMUA_Achr10P...	Banana	cytosol	81.27	88.89
TraesCS7D01G344300.4	Wheat	mitochondrion	88.65	86.15
TraesCS7A01G336600.4	Wheat	mitochondrion	88.65	86.15
VIT_15s0021g02450.t01	Wine grape	mitochondrion, plastid	81.4	82.71
KRG88956	Soybean	mitochondrion	74.67	81.21
AT2G45030.1	Thale cress	mitochondrion	79.95	80.37
AT1G45332.1	Thale cress	mitochondrion	79.55	79.97
Bra004884.1-P	Field mustard	plastid	78.89	79.21
CDY18957	Canola	plastid	78.76	78.97
CDX74705	Canola	plastid	78.63	78.94
Solyc01g090690.2.1	Tomato	plastid	78.76	78.55
PGSC0003DMT400066962	Potato	mitochondrion	78.63	78.42
EES12566	Sorghum	plastid	42.08	41.16
OQU84528	Sorghum	cytosol	8.44	23.62
OQU75622	Sorghum	cytosol	10.16	22.71
OQU84405	Sorghum	plastid	17.02	19.17
KXG37185	Sorghum	cytosol	21.11	18.98
KXG37183	Sorghum	cytosol	21.11	18.98
EES01455	Sorghum	cytosol	21.11	18.98
KXG30054	Sorghum	mitochondrion, plastid	16.75	18.93
EER89181	Sorghum	mitochondrion	16.49	18.8
EES01486	Sorghum	mitochondrion	16.62	18.72
EES03541	Sorghum	mitochondrion	20.45	18.39
EER90029	Sorghum	cytosol	19.39	14.77
KXG37923	Sorghum	cytosol	18.73	13.59
KXG30393	Sorghum	nucleus	13.59	11.68

Protein Annotations

MapMan:17.7.4.3	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
EntrezGene:8060888	UniProt:C5WSZ1	EnsemblPlants:EER90530	ProteinID:EER90530	ProteinID:EER90530.1	InterPro:EFG_III
InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0070125	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR014721
HAMAP:MF_00054_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764
PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43636	PANTHER:PTHR43636:SF2
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	EnsemblPlantsGene:SORBI_3001G015400	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	unigene:Sbi.1694	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00484	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI0001A82546
RefSeq:XP_002463532.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:1354962..1369982

Molecular Weight (calculated)

83982.6 Da

IEP (calculated)

6.368

GRAVY (calculated)

-0.265

Length

758 amino acids

Sequence
(BLAST)

001: MAMARRSASH LLSSFRPFSL LLQPHLADSP SPAAAAAAAS ARRAMSAASA LRARDEKDVA RWRESMARMR NIGISAHIDS GKTTLTERVL YYTGRIHEIH
101: EVRGRDGVGA KMDSMDLERE KGITIQSAAT YCTWKDYQIN IIDTPGHVDF TIEVERALRV LDGAILVLCS VGGVQSQSIT VDRQMRRYDI PRVAFINKLD
201: RMGADPWKVL NQARSKLRHH NAAVQVPIGL EEEFEGLVDL VEMKAYKFEG SSGQNVTASD IPLNMEDLVT EKRRELIEVV SEVDDQLAEA FLNDEPITAN
301: QLKAAIRRAT VAQKFIPVYM GSAFKNKGVQ PLLDGVLDYL PCPLEVDNYA LDQNKSEEKV LLAGTPAEPL VALAFKLEEG RFGQLTYLRI YDGVIRKGDF
401: IYNVNTGKKI KVPRLVRMHS NEMEDIQEAY AGQIVAVFGV DCASGDTFTD GTVKYTMTSM NVPEPVMSLA VSPISKDSGG QFSKALNRFQ KEDPTFRVGL
501: DAESGQTIIS GMGELHLDIY VERIKREYKV DAKVGKPRVN FRETITQRAE FDYLHKKQSG GQGQYGRVCG YIEPLPSGSD GKFEFDNMII GQAIPSNFIP
601: AIEKGFREAC NSGSLIGHPV ENLRIVLTDG ASHQVDSSEL AFKLAAIYAF RQCYTSAKPV ILEPVMKVEL KFPTEFQGTV TGDMNKRKGI IVGNEQEGDD
701: TIVVCHVPLN NMFGYATAIR SVTQGKGEFT MEYLEHNVVS QDVQMQLVNS YKAAKGTE

Best Arabidopsis Sequence Match ( AT1G45332.1 )
(BLAST)

001: MARFPTSPAP NRLLRLFSSN KRSSSPTAAL LTGDFQLIRH FSAGTAARVA KDEKEPWWKE SMDKLRNIGI SAHIDSGKTT LTERVLFYTG RIHEIHEVRG
101: RDGVGAKMDS MDLEREKGIT IQSAATYCTW KDYKVNIIDT PGHVDFTIEV ERALRVLDGA ILVLCSVGGV QSQSITVDRQ MRRYEVPRVA FINKLDRMGA
201: DPWKVLNQAR AKLRHHSAAV QVPIGLEENF QGLIDLIHVK AYFFHGSSGE NVVAGDIPAD MEGLVAEKRR ELIETVSEVD DVLAEKFLND EPVSASELEE
301: AIRRATIAQT FVPVFMGSAF KNKGVQPLLD GVVSFLPSPN EVNNYALDQN NNEERVTLTG SPDGPLVALA FKLEEGRFGQ LTYLRVYEGV IKKGDFIINV
401: NTGKRIKVPR LVRMHSNDME DIQEAHAGQI VAVFGIECAS GDTFTDGSVK YTMTSMNVPE PVMSLAVQPV SKDSGGQFSK ALNRFQKEDP TFRVGLDPES
501: GQTIISGMGE LHLDIYVERM RREYKVDATV GKPRVNFRET ITQRAEFDYL HKKQSGGAGQ YGRVTGYVEP LPPGSKEKFE FENMIVGQAI PSGFIPAIEK
601: GFKEAANSGS LIGHPVENLR IVLTDGASHA VDSSELAFKM AAIYAFRLCY TAARPVILEP VMLVELKVPT EFQGTVAGDI NKRKGIIVGN DQEGDDSVIT
701: ANVPLNNMFG YSTSLRSMTQ GKGEFTMEYK EHSAVSNEVQ AQLVNAYSAS KATE

Arabidopsis Description

MEFG1Elongation factor G-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C641]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.