CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75622	Sorghum	cytosol	28.04	22.42
EES01455	Sorghum	cytosol	33.21	10.68
KXG37183	Sorghum	cytosol	33.21	10.68
KXG37185	Sorghum	cytosol	33.21	10.68
EES03541	Sorghum	mitochondrion	32.47	10.44
EES01486	Sorghum	mitochondrion	21.03	8.47
EER90530	Sorghum	mitochondrion, plastid	23.62	8.44
EER89181	Sorghum	mitochondrion	19.93	8.12
KXG30054	Sorghum	mitochondrion, plastid	19.93	8.05
OQU84405	Sorghum	plastid	19.93	8.02
EES12566	Sorghum	plastid	21.03	7.35
EER90029	Sorghum	cytosol	26.57	7.24
KXG37923	Sorghum	cytosol	26.94	6.99
KXG30393	Sorghum	nucleus	11.44	3.51

Protein Annotations

EnsemblPlants:OQU84528	EnsemblPlantsGene:SORBI_3004G071401	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR000795	InterPro:P-loop_NTPase
InterPro:TF_GTP-bd_dom	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	PFAM:PF00009	ProteinID:OQU84528	ProteinID:OQU84528.1
SEG:seg	SUPFAM:SSF52540	UniParc:UPI000B42555B	UniProt:A0A1Z5RLB9	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr4:+:5772315..5775534

Molecular Weight (calculated)

30257.1 Da

IEP (calculated)

5.864

GRAVY (calculated)

-0.271

Length

271 amino acids

Sequence
(BLAST)

001: MVKLIKEIPN TIIEKDHNHY GKNKSALDGE RVRDIERVRN VVIICPRKHD KTKLLDSLLP SRGTGARAEE EGAGESGDLS FCYDMQVGNV QKDDHTFFIN
101: IIDSPGHADA PSKATSALTL ADGAILLVDE GVSLHQGGLI KHAVSERIKT VLSLNILDSW LYRSIDDGEE VYQGLFQAIK NINEVMESYD DKLLGDLTFS
201: PEKGTVAFTS MSYGWGFTLT SFSKMLAPLF QLDEAFIRKK IWGDNFFDMK TMTWTSKNTG SPSCLRGFFL H

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.