CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015929_P002	Maize	plastid	96.72	96.72
Os02t0285800-01	Rice	plasma membrane	90.91	91.18
TraesCS6D01G183500.1	Wheat	plastid	89.57	89.43
TraesCS6B01G224800.2	Wheat	plastid	89.72	89.19
TraesCS6A01G192800.1	Wheat	plastid	89.57	89.17
HORVU6Hr1G050160.1	Barley	plastid	63.04	79.36
GSMUA_Achr5P14760_001	Banana	plastid	79.43	78.27
VIT_08s0007g08290.t01	Wine grape	plastid	77.65	77.19
Solyc03g058190.2.1	Tomato	plastid	76.6	76.49
AT5G13650.2	Thale cress	plastid	76.6	76.04
Bra008811.1-P	Field mustard	plastid	76.3	75.96
CDY65992	Canola	plastid	76.16	75.82
CDY09816	Canola	plastid	76.16	75.7
KRH71976	Soybean	nucleus	75.86	75.3
CDX91105	Canola	plastid	75.41	75.07
KRH33159	Soybean	nucleus	75.71	74.71
CDX85635	Canola	plastid	75.41	71.47
EES01486	Sorghum	mitochondrion	39.34	39.23
EER89181	Sorghum	mitochondrion	22.95	23.16
OQU84405	Sorghum	plastid	23.1	23.03
OQU84528	Sorghum	cytosol	8.05	19.93
OQU75622	Sorghum	cytosol	9.84	19.47
EER90530	Sorghum	mitochondrion, plastid	18.93	16.75
EES12566	Sorghum	plastid	17.88	15.48
KXG37185	Sorghum	cytosol	18.78	14.95
KXG37183	Sorghum	cytosol	18.78	14.95
EES01455	Sorghum	cytosol	18.78	14.95
EES03541	Sorghum	mitochondrion	18.33	14.59
EER90029	Sorghum	cytosol	17.88	12.06
KXG37923	Sorghum	cytosol	17.88	11.48
KXG30393	Sorghum	nucleus	9.39	7.14

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.40.50.250	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
UniProt:A0A194YPA2	InterPro:BipA_V	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0000302	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0010468	GO:GO:0016787	GO:GO:0031425	InterPro:G_TR_CS	InterPro:IPR000795	EnsemblPlants:KXG30054
ProteinID:KXG30054	ProteinID:KXG30054.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF4	SMART:SM00838
EnsemblPlantsGene:SORBI_3004G128900	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01394	InterPro:Transl_B-barrel_sf	InterPro:TypA_GTP-bd	UniParc:UPI0003C72EF6	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:16357825..16366770

Molecular Weight (calculated)

73718.8 Da

IEP (calculated)

6.981

GRAVY (calculated)

-0.254

Length

671 amino acids

Sequence
(BLAST)

001: MQMQTITLRA GPAARRPTPP PASSAHLAAS GRCLLRAPSS LRRRRTRSLR ASASLEQVKE VAGSPVPSAG KSSQATRRDV RNIAIVAHVD HGKTTLVDSM
101: LRQAKVFRDN QVVQERIMDS NDLERERGIT ILSKNTSITY KGTKINIIDT PGHSDFGGEV ERVLNMVEGV LLVVDSVEGP MPQTRFVLKK ALEFGHAVVV
201: VVNKIDRPTA RPEFVVNSTF ELFIELNATD EQCDFQTVYA SGIKGKAGLS PENLADDLGP LFEAILRCIP EPRIEKDGAL QMLVSNTEYD EHKGRIAIGR
301: LHAGELQRGM EVKVCTPDDA CRVSKVSELF VYQNFSRVPV ESVSAGDICA VCGMDDIMIG ETIADKVTGT PLPTIKVEEP TVRMSFSINT SPFVGREGKY
401: VTSRNLRDRL YRELERNLAM KVEDGETADT FLVSGRGTLH LTILIENMRR EGYEFMIGPP KVINKTVDGK LLEPYEIAAV EVPEESMGSV VELLGKRRGQ
501: MVDMEADGPE GTTLLKYKIP TRGLIGLRNA VLTASRGRAI LNTIFDSYGP WAGDLSSRDQ GSLVAFEDGS TTSYALLNAQ ERGVLFVQPG QDVYKGQIVG
601: IHQRPGDLAI NVCKKKAATN VRSNKETTVV LDEALSYSLD DCIEFIQEDE LVEVTPASIR MCKNPKISKK K

Best Arabidopsis Sequence Match ( AT5G13650.2 )
(BLAST)

001: MELSLSTSSA SPAVLRRQAS PLLHKQQVLG VSFASALKPG GGALRFPSRR PLPRPITCSA SPSTAEPASV EVKKKQLDRR DNVRNIAIVA HVDHGKTTLV
101: DSMLRQAKVF RDNQVMQERI MDSNDLERER GITILSKNTS ITYKNTKVNI IDTPGHSDFG GEVERVLNMV DGVLLVVDSV EGPMPQTRFV LKKALEFGHA
201: VVVVVNKIDR PSARPEFVVN STFELFIELN ATDEQCDFQA IYASGIKGKA GLSPDDLAED LGPLFEAIIR CVPGPNIEKD GALQMLATNI EYDEHKGRIA
301: IGRLHAGVLR KGMDVRVCTS EDSCRFARVS ELFVYEKFYR VPTDSVEAGD ICAVCGIDNI QIGETIADKV HGKPLPTIKV EEPTVKMSFS VNTSPFSGRE
401: GKYVTSRNLR DRLNRELERN LAMKVEDGET ADTFIVSGRG TLHITILIEN MRREGYEFMV GPPKVINKRV NDKLLEPYEI ATVEVPEAHM GPVVELLGKR
501: RGQMFDMQGV GSEGTTFLRY KIPTRGLLGL RNAILTASRG TAILNTVFDS YGPWAGDIST RDLGSLVAFE DGTSTSYALA SAQERGQMFV GSGVDVYKGQ
601: IVGIHQRPGD LGLNICKKKA ATNIRSNKDV TVILDTPLTY SLDDCIEYIE EDELVEVTPS SIRMCKNQKM AKKGRQ

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4K409]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.