CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008811.1-P	Field mustard	plastid	98.96	99.11
CDY65992	Canola	plastid	98.81	98.96
CDX91105	Canola	plastid	97.33	97.48
AT5G13650.2	Thale cress	plastid	95.7	95.56
CDX85635	Canola	plastid	97.19	92.66
Solyc03g058190.2.1	Tomato	plastid	82.22	82.59
KRH71976	Soybean	nucleus	80.74	80.62
VIT_08s0007g08290.t01	Wine grape	plastid	80.3	80.3
KRH33159	Soybean	nucleus	80.0	79.41
KXG30054	Sorghum	mitochondrion, plastid	75.7	76.16
Zm00001d015929_P002	Maize	plastid	75.56	76.01
Os02t0285800-01	Rice	plasma membrane	75.26	75.93
GSMUA_Achr5P14760_001	Banana	plastid	76.59	75.92
TraesCS6A01G192800.1	Wheat	plastid	73.78	73.89
TraesCS6D01G183500.1	Wheat	plastid	73.48	73.81
TraesCS6B01G224800.2	Wheat	plastid	73.63	73.63
HORVU6Hr1G050160.1	Barley	plastid	52.0	65.85
CDX84803	Canola	mitochondrion	36.74	39.74
CDY19061	Canola	mitochondrion	38.52	38.86
CDY54484	Canola	mitochondrion	38.37	38.71
CDY23967	Canola	cytosol	6.52	37.93
CDY44781	Canola	plastid	24.0	24.0
CDY40739	Canola	plastid	23.56	23.25
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	22.67	22.24
CDX67441	Canola	plastid	22.52	22.16
CDY49975	Canola	cytosol	11.56	19.55
CDX74705	Canola	plastid	20.0	17.88
CDY18957	Canola	plastid	19.85	17.72
CDY10337	Canola	cytosol	12.44	17.72
CDX78349	Canola	cytosol	5.93	17.32
CDY69302	Canola	cytosol	7.7	16.3
CDY31838	Canola	plastid	17.33	15.1
CDY46917	Canola	plastid	17.33	15.1
CDX90241	Canola	cytosol, extracellular	17.33	14.79
CDY40423	Canola	cytosol	16.89	14.49
CDY24982	Canola	endoplasmic reticulum, vacuole	17.78	14.32
CDY32224	Canola	cytosol	10.52	13.79
CDY10688	Canola	cytosol	16.74	12.96
CDY15566	Canola	cytosol	14.67	11.88
CDY09982	Canola	nucleus	17.04	11.63
CDY70516	Canola	cytosol	8.44	11.2
CDY70689	Canola	cytosol	8.3	10.35
CDY71233	Canola	mitochondrion, nucleus	8.15	9.86
CDY05533	Canola	cytosol	9.19	9.49
CDY32072	Canola	cytosol	9.04	9.43
CDY70526	Canola	nucleus	0.89	7.06
CDY49974	Canola	nucleus	0.89	7.06
CDY54261	Canola	nucleus	2.22	6.52
CDY32225	Canola	nucleus	3.26	6.21

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.40.50.250	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
GO:A0A078F8X1	UniProt:A0A078F8X1	InterPro:BipA_V	EnsemblPlants:CDY09816	ProteinID:CDY09816	ProteinID:CDY09816.1
InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00031535001	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF4	SMART:SM00838	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01394
InterPro:Transl_B-barrel_sf	InterPro:TypA_GTP-bd	UniParc:UPI0004EF11F6	SEG:seg	:	:

Description

BnaC09g43450DBnaC09g43450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8X1]

Coordinates

chrLK031999:+:242128..245913

Molecular Weight (calculated)

74542.9 Da

IEP (calculated)

7.518

GRAVY (calculated)

-0.242

Length

675 amino acids

Sequence
(BLAST)

001: MELSLSTSYP ASPAVLRRQA SPLLHNQQVL GVSFASVLKP GGVLRFRSRR RPLHRPITCS ASPSTAEPSS EVKKKTLVRR NDVRNIAIVA HVDHGKTTLV
101: DSMLRQAKVF RDNQVMQERI MDSNDLERER GITILSKNTS ITYKNTKVNI IDTPGHSDFG GEVERVLNMV DGVLLVVDSV EGPMPQTRFV LKKALEFGHA
201: VVVVVNKIDR PSARPEFVVN STFELFIELN ATDEQCDFQA IYASGIKGKA GLTPDDLSED LGPLFEAIIR CVPGPNIEKD GALQMLATNI EYDEHKGRIA
301: IGRLHAGALR KGMDVRVCTS EDSCRFARVS ELFVYEKFYR VPADTVEAGD ICAVCGIDDI QIGETIADKA HGKPLPTIKV EEPTVKMSFS VNTSPFSGRE
401: GKYVTSRNLR DRLNRELERN LAMKVEDGET ADTFIISGRG TLHITILIEN MRREGYEFMV GPPKVINKRV NDKLLEPYEV ATVEVPENHM GPVVELLGKR
501: RGQMFDMQGV GSEGTVFLRY KIPTRGLLGL RNAILTASRG TAILNTVFDS YGPWAGDIST RDLGSLVAFE DGTSTSYALA SAQERGQMFV GAGVDVYKGQ
601: IVGIHQRPGD LGLNICKKKA ATNIRSNKDV TVVLDTPLTY SLDDCIEYIE EDELVEVTPL SIRMCKNPKM AKKGR

Best Arabidopsis Sequence Match ( AT5G13650.1 )
(BLAST)

001: MELSLSTSSA SPAVLRRQAS PLLHKQQVLG VSFASALKPG GGALRFPSRR PLPRPITCSA SPSTAEPASE VKKKQLDRRD NVRNIAIVAH VDHGKTTLVD
101: SMLRQAKVFR DNQVMQERIM DSNDLERERG ITILSKNTSI TYKNTKVNII DTPGHSDFGG EVERVLNMVD GVLLVVDSVE GPMPQTRFVL KKALEFGHAV
201: VVVVNKIDRP SARPEFVVNS TFELFIELNA TDEQCDFQAI YASGIKGKAG LSPDDLAEDL GPLFEAIIRC VPGPNIEKDG ALQMLATNIE YDEHKGRIAI
301: GRLHAGVLRK GMDVRVCTSE DSCRFARVSE LFVYEKFYRV PTDSVEAGDI CAVCGIDNIQ IGETIADKVH GKPLPTIKVE EPTVKMSFSV NTSPFSGREG
401: KYVTSRNLRD RLNRELERNL AMKVEDGETA DTFIVSGRGT LHITILIENM RREGYEFMVG PPKVINKRVN DKLLEPYEIA TVEVPEAHMG PVVELLGKRR
501: GQMFDMQGVG SEGTTFLRYK IPTRGLLGLR NAILTASRGT AILNTVFDSY GPWAGDISTR DLGSLVAFED GTSTSYALAS AQERGQMFVG SGVDVYKGQI
601: VGIHQRPGDL GLNICKKKAA TNIRSNKDVT VILDTPLTYS LDDCIEYIEE DELVEVTPSS IRMCKNQKMA KKGRQ

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4K409]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.