CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024798.1-P	Field mustard	cytosol	96.55	31.3
CDY09982	Canola	nucleus	94.04	30.33
AT1G06220.2	Thale cress	cytosol	90.91	29.38
AT5G25230.1	Thale cress	cytosol	83.39	27.34
VIT_11s0118g00720.t01	Wine grape	nucleus	81.5	26.32
KRH20245	Soybean	nucleus	78.68	25.46
KRH03566	Soybean	nucleus	77.74	25.1
PGSC0003DMT400078978	Potato	cytosol	75.86	24.52
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	72.73	23.89
Solyc07g007210.2.1	Tomato	nucleus	64.58	22.27
Zm00001d046549_P002	Maize	cytosol	68.34	22.27
EER90029	Sorghum	cytosol	68.03	21.81
TraesCS7D01G376800.1	Wheat	cytosol	67.71	21.73
TraesCS7B01G282300.1	Wheat	cytosol	67.71	21.73
TraesCS7A01G380300.1	Wheat	nucleus	67.71	21.73
Os06t0608300-01	Rice	nucleus	67.4	21.56
HORVU7Hr1G090710.6	Barley	plastid	61.76	19.9
CDY15566	Canola	cytosol	51.1	19.57
CDY49975	Canola	cytosol	21.0	16.79
CDY10337	Canola	cytosol	20.06	13.5
CDY32224	Canola	cytosol	16.3	10.1
CDX67441	Canola	plastid	20.06	9.33
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	19.44	9.01
CDY24982	Canola	endoplasmic reticulum, vacuole	23.2	8.83
CDY40423	Canola	cytosol	21.0	8.51
CDX90241	Canola	cytosol, extracellular	21.0	8.47
CDY44781	Canola	plastid	16.93	8.0
CDY40739	Canola	plastid	16.93	7.89
CDX84803	Canola	mitochondrion	15.36	7.85
CDY54484	Canola	mitochondrion	16.3	7.77
CDY19061	Canola	mitochondrion	16.3	7.77
CDY65992	Canola	plastid	16.3	7.72
CDX91105	Canola	plastid	16.3	7.72
CDY09816	Canola	plastid	16.3	7.7
CDX85635	Canola	plastid	16.61	7.49
CDY10688	Canola	cytosol	20.06	7.34
CDY46917	Canola	plastid	17.24	7.1
CDY31838	Canola	plastid	16.93	6.97
CDX74705	Canola	plastid	15.05	6.36
CDY18957	Canola	plastid	15.05	6.35
CDX78349	Canola	cytosol	3.45	4.76
CDY32072	Canola	cytosol	4.08	2.01
CDY05533	Canola	cytosol	4.08	1.99
CDY32225	Canola	nucleus	0.0	0.0
CDY23967	Canola	cytosol	0.0	0.0
CDY71233	Canola	mitochondrion, nucleus	0.0	0.0
CDY70689	Canola	cytosol	0.0	0.0
CDY70526	Canola	nucleus	0.0	0.0
CDY70516	Canola	cytosol	0.0	0.0
CDY49974	Canola	nucleus	0.0	0.0
CDY54261	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078JUZ0	UniProt:A0A078JUZ0	EnsemblPlants:CDY69302	ProteinID:CDY69302
ProteinID:CDY69302.1	InterPro:EFTUD2_N	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00086549001	InterPro:IPR000795	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF16004	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF6
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	UniParc:UPI0004EEF0C2	SEG:seg

Description

BnaA06g39950DBnaA06g39950D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUZ0]

Coordinates

chrLK039083:-:3..1549

Molecular Weight (calculated)

35772.0 Da

IEP (calculated)

4.269

GRAVY (calculated)

-0.415

Length

319 amino acids

Sequence
(BLAST)

001: MDDSLYDEFG NYIGPEIESD RESDDEIEDS EFQDNKLPED DGSDGEHHPP GGWITTINDV EMDNQIVLPE DKKYYPTAEE VYGEDVETLV MDEDEQPLEL
101: PIIKPVRDLR FEVGVKDSTT YVSTQFLVGL MSNPALVRNV SLVGHLQHGK TVFMDMLVEQ THHMSTFNAK NDKHIKYTDT RVDEQERNIS IKAVPMSLVL
201: EDSRSKSYLC NVVDTPGHVN FSDEMTASLR LSDGAVLIVD AAEGVMVNTE RAIRHAIQDH LPIVVVINKV DRLITELKLP PRDAYYKLRH TIEVINNHIS
301: AASTTAGNLP LIDPAAGNV

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.