CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71233	Canola	mitochondrion, nucleus	99.63	96.59
CDY15566	Canola	cytosol	99.63	64.71
CDY09982	Canola	nucleus	98.15	53.69
Solyc07g007210.2.1	Tomato	nucleus	90.57	52.97
AT1G06220.2	Thale cress	cytosol	96.3	52.79
AT5G25230.1	Thale cress	cytosol	94.82	52.72
VIT_11s0118g00720.t01	Wine grape	nucleus	91.13	49.9
PGSC0003DMT400078978	Potato	cytosol	90.39	49.54
KRH03566	Soybean	nucleus	89.83	49.19
KRH20245	Soybean	nucleus	89.65	49.19
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	85.58	47.68
EER90029	Sorghum	cytosol	85.95	46.73
Zm00001d046549_P002	Maize	cytosol	83.36	46.07
HORVU7Hr1G090710.6	Barley	plastid	84.1	45.96
Os06t0608300-01	Rice	nucleus	84.66	45.94
TraesCS7D01G376800.1	Wheat	cytosol	84.29	45.88
TraesCS7B01G282300.1	Wheat	cytosol	84.29	45.88
TraesCS7A01G380300.1	Wheat	nucleus	84.29	45.88
CDY49974	Canola	nucleus	7.02	44.71
CDY70526	Canola	nucleus	7.02	44.71
CDY70516	Canola	cytosol	40.3	42.83
CDY54261	Canola	nucleus	15.9	37.39
CDY05533	Canola	cytosol	37.71	31.24
CDY32072	Canola	cytosol	37.34	31.22
CDX90241	Canola	cytosol, extracellular	37.71	25.79
CDY24982	Canola	endoplasmic reticulum, vacuole	37.15	23.99
CDY40423	Canola	cytosol	34.75	23.89
CDY32225	Canola	nucleus	14.79	22.6
CDY10688	Canola	cytosol	25.32	15.71
CDY46917	Canola	plastid	19.59	13.68
CDY31838	Canola	plastid	19.59	13.68
CDY32224	Canola	cytosol	11.65	12.23
CDX74705	Canola	plastid	15.34	10.99
CDY18957	Canola	plastid	15.34	10.98
CDY10337	Canola	cytosol	8.32	9.49
CDY23967	Canola	cytosol	2.03	9.48
CDY54484	Canola	mitochondrion	11.46	9.27
CDY19061	Canola	mitochondrion	11.46	9.27
CDX84803	Canola	mitochondrion	10.35	8.97
CDX67441	Canola	plastid	10.54	8.31
CDY65992	Canola	plastid	10.35	8.31
CDY09816	Canola	plastid	10.35	8.3
CDX91105	Canola	plastid	10.17	8.16
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	10.35	8.14
CDY44781	Canola	plastid	9.98	8.0
CDX85635	Canola	plastid	10.35	7.91
CDY40739	Canola	plastid	9.98	7.89
CDX78349	Canola	cytosol	3.14	7.36
CDY49975	Canola	cytosol	5.36	7.27
CDY69302	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:16.4.1.4.2	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	GO:A0A078JV58
UniProt:A0A078JV58	EnsemblPlants:CDY70689	ProteinID:CDY70689	ProteinID:CDY70689.1	InterPro:EFG_III/V	InterPro:EFG_V-like
InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	EnsemblPlantsGene:GSBRNA2T00005322001
InterPro:IPR014721	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PANTHER:PTHR42908	PANTHER:PTHR42908:SF6
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF54211
SUPFAM:SSF54980	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	InterPro:U5-116kDa_C	UniParc:UPI0004EE2909	:

Description

BnaCnng69360DBnaCnng69360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JV58]

Coordinates

chrLK042963:+:53..2597

Molecular Weight (calculated)

60702.1 Da

IEP (calculated)

4.990

GRAVY (calculated)

-0.211

Length

541 amino acids

Sequence
(BLAST)

001: MLVKQIPSPK EAAARKVDHA YTGPKDSAIY EAMVECDPSG PLMVNVTKLY PKSDTSVFDV FGRVYSGTLR TGQSVRVLGE GYSPEDEEDM TVKEVTKLWI
101: YQARYRIPVS SAPPGSWVLI EGVDASIMKT ATLCNENYDE DVFIFRALQF NTLPVVKTAT EPLNPSELPK MVEGLRKISK SYPLAITKVE ESGEHTILGT
201: GELYLDSIMK DLRELYSEVE VKVADPVVSF CETVVESSSM KCFAETPNKK NKITMIAEPL DRGLAEDIEN GVVSIDWNRK QLGDFFKTKY DWDLLAARSI
301: WAFGPDKQGP NILLDDTLPT EVDKNLMMAV KDSIVQGFQW GAREGPLCDE PIRNVKFKIV DAWIAPEPLH RGSGQMIPTA RRVAYSSFLM ATPRLMEPVY
401: YVEIQTPIDC VTAIYTVLSR RRGHVTSDVP QPGTPAYIVK AFLPVIESFG FETDLRYHTQ GQAFCVSVFD HWAIVPGDPL DKSILLRPLE PAPIQHLARE
501: FMVKTRRRKG MSEDVSGNKF FDEAMMVELA QQTGDLHLQM M

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.