CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046549_P002	Maize	cytosol	96.98	98.57
Os06t0608300-01	Rice	nucleus	95.28	95.09
TraesCS7A01G380300.1	Wheat	nucleus	93.67	93.76
TraesCS7D01G376800.1	Wheat	cytosol	93.57	93.66
TraesCS7B01G282300.1	Wheat	cytosol	93.57	93.66
HORVU7Hr1G090710.6	Barley	plastid	90.75	91.21
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	84.22	86.3
CDY70689	Canola	cytosol	46.73	85.95
CDY71233	Canola	mitochondrion, nucleus	48.14	85.84
Solyc07g007210.2.1	Tomato	nucleus	77.19	83.03
CDY15566	Canola	cytosol	69.05	82.47
VIT_11s0118g00720.t01	Wine grape	nucleus	81.61	82.19
KRH20245	Soybean	nucleus	80.0	80.73
KRH03566	Soybean	nucleus	80.1	80.67
PGSC0003DMT400078978	Potato	cytosol	79.2	79.84
Bra030642.1-P	Field mustard	cytosol	78.09	78.72
CDY09982	Canola	nucleus	78.19	78.67
Bra024798.1-P	Field mustard	cytosol	77.59	78.46
AT1G06220.2	Thale cress	cytosol	77.49	78.12
AT5G25230.1	Thale cress	cytosol	75.78	77.49
CDY69302	Canola	cytosol	21.81	68.03
EES01455	Sorghum	cytosol	32.96	38.91
KXG37183	Sorghum	cytosol	32.96	38.91
KXG37185	Sorghum	cytosol	32.96	38.91
EES03541	Sorghum	mitochondrion	31.46	37.13
OQU75622	Sorghum	cytosol	11.96	35.1
OQU84528	Sorghum	cytosol	7.24	26.57
KXG37923	Sorghum	cytosol	26.13	24.88
KXG30393	Sorghum	nucleus	20.6	23.24
EES12566	Sorghum	plastid	16.28	20.9
EER90530	Sorghum	mitochondrion, plastid	14.77	19.39
EES01486	Sorghum	mitochondrion	12.56	18.57
KXG30054	Sorghum	mitochondrion, plastid	12.06	17.88
EER89181	Sorghum	mitochondrion	11.26	16.84
OQU84405	Sorghum	plastid	11.36	16.79

Protein Annotations

MapMan:16.4.1.4.2	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	EntrezGene:8065086	UniProt:C5Z5Q8	EnsemblPlants:EER90029	ProteinID:EER90029	ProteinID:EER90029.1
InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTUD2_N	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR000795
InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764
PFAM:PF16004	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF6	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	EnsemblPlantsGene:SORBI_3010G188000	SUPFAM:SSF50447	SUPFAM:SSF52540
SUPFAM:SSF54211	SUPFAM:SSF54980	unigene:Sbi.12329	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	InterPro:U5-116kDa_C	UniParc:UPI0001A89988	RefSeq:XP_002438662.1	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:52864783..52870776

Molecular Weight (calculated)

109923.0 Da

IEP (calculated)

4.905

GRAVY (calculated)

-0.175

Length

995 amino acids

Sequence
(BLAST)

001: MDDSLYDEFG NYIGPELADS DADDDSDAGG ASPSPSASGS PSPAARSSSG SPSRPAALMD VDDDEGDPSQ QAVVLAEDKK YYPTAEEVYG PGVEALVMDE
101: DEQPLEMPII APPRVVKFEV GTRAAATSTY ASTDFLLGLA GNPALVRNVT LVGHLQHGKT VFMDMLVEQT HEVDTFDSEG ERHVRFTDTR VDEQERQVSI
201: KAVPMSLVLE GGNGKSYLCN IMDTPGHVNF SDEMTAALRL ADGAVLVVDA AEGVMVNTER AIRHAIQERL PIVVVINKVD RLITELKLPP NDAYFKLRHT
301: LEAINDLISS CSTTVGGTQL VDPAAGNVCF ASGAAGWSFT LQSFAHLYLK IHGIQFDHEK FASRLWGDLY FHPDSRTFKK KPPKEGANRS FVEFILEPLY
401: KIYSLVVGEQ KGNVESKLAE LGVTLSNAAY KLNVRPLLRL ACRSIFGTAT GFTDMLVKHI PSVKDAAARK IDHIYTGPQD SSIVDAMKKC DPNGPLMVNV
501: TKLYPKSDCS VFDAFGRVYS GTIQTGQTVR VLGEGYSPDD EEDMTVKEVT KLWVYQARYR VAISKAPAGS WVLIEGVDAS IMKTATICPM NIDEDVYIFR
601: PLRFNTLPVV KIAAEPLNPS ELPKMVEGLR KISKSYPLAI TKVEESGEHT ILGTGELYLD SIMKDLRELY SEVEVKVADP VVTFCETVVD TSSMKCFAET
701: PNKRNKITML AEPLEKGLAE DIENGLVSLD SRQKEITDFF RQRYQWDVLA ARSIWAFGPD KQGPNILLDD TLSIEVDKNL LNAVKDSIVQ GFQWGAREGP
801: LCDEPIRNVK FKILNANIAP EPLHRGGGQI IPTARRVVYS AFLMANPRLM EPVYYVEIQT PIDCVSAIYT VLSRRRGHVT ADVPKPGTPI YIVKAFLPVI
901: ESFGFETDLR YHTQGQAFCL SVFDHWAIVP GDPLDKSIVL RPLEPAPIQH LAREFMVKTR RRKGMSEDVS INKFFDEAMM NELAQQAADI HLQMM

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.