Factsheet for Os06t0608300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 19621931
nucleus: 23777608
golgi: 25047511
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90029	Sorghum	cytosol	95.09	95.28
Zm00001d046549_P002	Maize	cytosol	92.78	94.48
TraesCS7A01G380300.1	Wheat	nucleus	93.58	93.86
TraesCS7D01G376800.1	Wheat	cytosol	93.48	93.76
TraesCS7B01G282300.1	Wheat	cytosol	93.38	93.66
HORVU7Hr1G090710.6	Barley	plastid	90.67	91.31
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	84.15	86.41
CDY71233	Canola	mitochondrion, nucleus	47.44	84.77
CDY70689	Canola	cytosol	45.94	84.66
Solyc07g007210.2.1	Tomato	nucleus	76.43	82.38
CDY15566	Canola	cytosol	68.3	81.75
VIT_11s0118g00720.t01	Wine grape	nucleus	80.94	81.68
KRH20245	Soybean	nucleus	79.44	80.32
KRH03566	Soybean	nucleus	79.44	80.16
PGSC0003DMT400078978	Potato	cytosol	78.44	79.23
CDY09982	Canola	nucleus	77.73	78.36
Bra030642.1-P	Field mustard	cytosol	77.33	78.12
Bra024798.1-P	Field mustard	cytosol	76.93	77.95
AT1G06220.2	Thale cress	cytosol	76.93	77.71
AT5G25230.1	Thale cress	cytosol	75.23	77.08
CDY69302	Canola	cytosol	21.56	67.4
Os01t0742200-01	Rice	cytosol, nucleus	32.8	39.59
Os01t0723000-01	Rice	cytosol, nucleus, plasma membrane	31.29	36.58
Os04t0538166-00	Rice	cytosol, mitochondrion, peroxisome	3.81	26.95
Os02t0543300-00	Rice	mitochondrion	25.38	25.17
Os03t0650700-01	Rice	cytosol	25.68	24.88
Os05t0467501-00	Rice	cytosol	10.93	23.9
Os04t0538100-01	Rice	plasma membrane	9.23	23.83
Os03t0565500-01	Rice	mitochondrion	14.64	19.29
Os01t0752700-01	Rice	mitochondrion	12.54	18.57
Os02t0285800-01	Rice	plasma membrane	11.63	17.34
Os06t0144800-01	Rice	mitochondrion	11.43	17.19

Protein Annotations

MapMan:16.4.1.4.2	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	EntrezGene:4341492	EMBL:AK102908	ProteinID:BAD35618.1	ProteinID:BAF19952.1	ProteinID:BAS98550.1
ProteinID:BAS98551.1	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTUD2_N	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795
InterPro:IPR014721	EnsemblPlantsGene:Os06g0608300	EnsemblPlants:Os06t0608300-01	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679
PFAM:PF03144	PFAM:PF03764	PFAM:PF16004	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF6	UniProt:Q69V60	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889
SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	InterPro:U5-116kDa_C	UniParc:UPI000040385A	RefSeq:XP_015643866.1
SEG:seg	:	:	:	:	:

Description

Similar to Small nuclear ribonucleoprotein component. (Os06t0608300-01);Similar to U5 small nuclear ribonucleoprotein component. (Os06t0608300-02)

Coordinates

chr6:-:24206659..24212569

Molecular Weight (calculated)

110504.0 Da

IEP (calculated)

4.947

GRAVY (calculated)

-0.222

Length

997 amino acids

Sequence
(BLAST)

001: MDDSLYDEFG NYIGPELADS DADDSDADAS PSPSPSRSPS PSARSPSGSP SRPAALMDVD GGDDDDDADP SQSAVVLAED KKYYPTAEEV YGPGVEALVM
101: DEDEQPLEQP IVAPPRVVRF EVGTRAEATS TYATTDFLLG LAANPALVRN VALVGHLQHG KTVFMDMLVE QTHEVDTFDS EGERHVRFTD TRVDEQERRV
201: SIKAVPMSLV LEGGNGKSYL CNIMDTPGHV NFSDEMTAAL RIADGAVLVV DAAEGVMVNT ERAIRHATQE RLPIVVVINK VDRLITELKL PPNDAYFKLR
301: HTLEAINDLI SSCSTTVGGT QLVDPAAGNV CFASGSAGWS FTLQSFAHLY LKIHGIQFDH EKFASRLWGD LYYHPDTRTF KKKPPKEGAN RSFVEFVLEP
401: LYKIYSQVVG ESKGKVEATL SELGVTLSNA AYKLNVRPLL RLACRSIFGT STGFTDMLVK HIPSVKDAAP RKIEHIYTGP QDSTIVDAMK KCDPHAPLMV
501: NVTKLYPKSD CSVFDAFGRV YSGTIQTGQT VRVLGEGYSP DDEEDMTVKE VTKLWVYQAR YRVPISKAPA GSWVLIEGVD ASIMKTATIC PMKMDEDVYI
601: FRPLRFNTLP VVKIAAEPLN PSELPKMVEG LRKISKSYPL AVTKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVTFCETV VDTSSMKCFA
701: ETPNKRNKIT MVAEPLEKGL AEDIENGLVS LDSRQKEITD FFRQRYQWDV LAARSIWAFG PEKQGPNILL DDTLSVEVDK NLLNAVKDSI VQGFQWGARE
801: GPLCDEPIRN VKFKILNANI APEPLHRGGG QIIPTARRVV YSAFLMANPR LMEPVYYIEI QTPIDCVSAI YTVLSRRRGH VTADVPKPGT PIYVVKAFLP
901: VIESFGFETD LRYHTQGQAF CLSVFDHWAI VPGDPLDKNI VLRPLEPAPI QHLAREFMVK TRRRKGMSED VSINKFFDEA MMNELAQQAA DLHLQMM

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.