CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44781	Canola	plastid	80.95	27.7
CDY40739	Canola	plastid	80.95	27.34
CDX67441	Canola	plastid	45.89	15.45
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	45.89	15.41
CDY23967	Canola	cytosol	4.76	9.48
CDX84803	Canola	mitochondrion	16.88	6.25
CDY54484	Canola	mitochondrion	17.75	6.13
CDY19061	Canola	mitochondrion	17.75	6.13
CDY65992	Canola	plastid	17.32	5.93
CDX91105	Canola	plastid	17.32	5.93
CDY09816	Canola	plastid	17.32	5.93
CDX85635	Canola	plastid	17.75	5.79
CDY54261	Canola	nucleus	4.76	4.78
CDY24982	Canola	endoplasmic reticulum, vacuole	16.45	4.53
CDX90241	Canola	cytosol, extracellular	14.29	4.17
CDX74705	Canola	plastid	13.42	4.11
CDY40423	Canola	cytosol	13.85	4.07
CDY10337	Canola	cytosol	8.23	4.01
CDY18957	Canola	plastid	12.99	3.97
CDY32225	Canola	nucleus	6.06	3.95
CDY70516	Canola	cytosol	8.66	3.93
CDY69302	Canola	cytosol	4.76	3.45
CDY10688	Canola	cytosol	12.99	3.44
CDY49975	Canola	cytosol	5.63	3.26
CDY70689	Canola	cytosol	7.36	3.14
CDY31838	Canola	plastid	10.39	3.1
CDY46917	Canola	plastid	10.39	3.1
CDY32072	Canola	cytosol	8.66	3.09
CDY05533	Canola	cytosol	8.66	3.06
CDY71233	Canola	mitochondrion, nucleus	7.36	3.05
CDY09982	Canola	nucleus	11.69	2.73
CDY15566	Canola	cytosol	8.23	2.28
CDY49974	Canola	nucleus	0.43	1.18
CDY70526	Canola	nucleus	0.43	1.18
CDY32224	Canola	cytosol	1.73	0.78

Protein Annotations

Gene3D:3.30.70.2570	Gene3D:3.30.70.3380	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlants:CDX78349	ProteinID:CDX78349
ProteinID:CDX78349.1	InterPro:EFG_III/V	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00129713001	InterPro:IPR000795	InterPro:IPR038363
InterPro:LepA_CTD	InterPro:LepA_C_sf	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF06421	PANTHER:PTHR43512
PANTHER:PTHR43512:SF1	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:TF_GTP-bd_dom	UniParc:UPI0004EEA0EB	:

Description

BnaA03g02610D

Coordinates

chrLK031815:-:341555..343862

Molecular Weight (calculated)

26180.3 Da

IEP (calculated)

9.737

GRAVY (calculated)

-0.076

Length

231 amino acids

Sequence
(BLAST)

001: MSQLFWKLQV PISNIRNFSI IAHIDHGKST LADKLLQILQ VMLRVNTVNG DITMCSNPSL LPQPGQRKSV EEPCVKIELL TPKDYIAENR ASLLYELPPC
101: RGEILPMVGD FFDQLKSRTN GYASMEYSVI GYRESDLIKL DILINTELVE PLSTIVRRDK AYSVGRALTR KLKELIPRQM FKVPIQACIG SKVIASEALS
201: AIRKDVLAKC YGGEIFLGRR SFLRNRRQEV L

Best Arabidopsis Sequence Match ( AT5G08650.1 )
(BLAST)

001: MAMASAMDLS SPPTFFLSGT STSSPSLRRL SSISVSGFRR HSNRKLQILC QATAGTEPQS GLSVSGSKLA ARSGQDRLLK VPISNIRNFS IIAHIDHGKS
101: TLADKLLQVT GTVQNRDMKE QFLDNMDLER ERGITIKLQA ARMRYVYEDT PFCLNLIDTP GHVDFSYEVS RSLAACEGAL LVVDASQGVE AQTLANVYLA
201: LENNLEIIPV LNKIDLPGAE PEKVLREIEE VIGLDCSKAI FCSAKEGIGI TEILDAIVQR IPAPLDTAGK PLRALIFDSY YDPYRGVIVY FRVIDGKVKK
301: GDRIFFMASG KDYFADEVGV LSPNQIQVDE LYAGEVGYIA ASVRSVADAR VGDTITHYSR KAESSLPGYE EATPMVFCGL FPVDADQFPD LRDALEKLQL
401: NDAALKFEPE TSSAMGFGFR CGFLGLLHME IVQERLEREY NLNLITTAPS VVYRVNSVNG DTTLCSNPSR LPDPGQRKSV EEPYVKIELL TPKDYIGALM
501: ELAQERRGEF KEMKYIAENR ASILYELPLA EMVGDFFDQL KSRTKGYASM EYSVIGYRES DLIKLDILIN AEMVEPLSTI VHRDKAYSVG RALTQKLKEL
601: IPRQMFKVPI QACIGSKVIA SEALSAIRKD VLAKCYGGDI SRKKKLLKKQ AAGKKRMKAI GRVDVPQEAF MAVLKLEREV L

Arabidopsis Description

Translation factor GUF1 homolog, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178USI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.