CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY65427

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08650.1	CDY65427	AT4G25920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028651.1-P	Field mustard	plastid	98.52	97.22
CDY40739	Canola	plastid	98.52	97.22
AT5G08650.1	Thale cress	plastid	92.59	91.78
GSMUA_Achr3P07220_001	Banana	cytosol, nucleus, plastid	72.44	86.7
HORVU6Hr1G025120.1	Barley	cytosol	13.78	86.11
CDX78349	Canola	cytosol	27.7	80.95
VIT_07s0031g03050.t01	Wine grape	plastid	81.48	80.88
Solyc04g015450.2.1	Tomato	nucleus	80.59	79.88
PGSC0003DMT400070154	Potato	plastid	80.44	79.62
KRH53996	Soybean	plasma membrane	80.59	79.18
OQU84405	Sorghum	plastid	78.37	78.6
Zm00001d053861_P005	Maize	plastid	77.63	77.98
TraesCS6B01G159200.1	Wheat	plastid	76.59	77.16
TraesCS6D01G120800.1	Wheat	plastid	76.44	77.01
TraesCS6A01G130900.1	Wheat	plastid	76.44	77.01
KRH63943	Soybean	plastid	80.15	72.13
HORVU6Hr1G025110.1	Barley	plastid	56.74	71.72
CDX67441	Canola	plastid	46.96	46.21
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	46.96	46.08
CDY65992	Canola	plastid	24.15	24.18
CDY09816	Canola	plastid	24.0	24.0
CDY54484	Canola	mitochondrion	23.7	23.92
CDY19061	Canola	mitochondrion	23.7	23.92
CDX84803	Canola	mitochondrion	21.93	23.72
CDX91105	Canola	plastid	23.11	23.15
CDX85635	Canola	plastid	23.41	22.32
CDY10337	Canola	cytosol	13.48	19.2
CDX74705	Canola	plastid	20.44	18.28
CDY49975	Canola	cytosol	10.67	18.05
CDY18957	Canola	plastid	20.15	17.99
CDY69302	Canola	cytosol	8.0	16.93
CDY46917	Canola	plastid	18.52	16.13
CDY31838	Canola	plastid	18.37	16.0
CDY40423	Canola	cytosol	17.63	15.12
CDX90241	Canola	cytosol, extracellular	17.63	15.04
CDY32224	Canola	cytosol	11.41	14.95
CDY24982	Canola	endoplasmic reticulum, vacuole	17.93	14.44
CDY10688	Canola	cytosol	18.07	13.99
CDY23967	Canola	cytosol	2.37	13.79
CDY15566	Canola	cytosol	15.11	12.24
CDY70516	Canola	cytosol	9.04	11.98
CDY09982	Canola	nucleus	16.89	11.53
CDY70689	Canola	cytosol	8.0	9.98
CDY05533	Canola	cytosol	9.63	9.95
CDY71233	Canola	mitochondrion, nucleus	8.15	9.86
CDY32072	Canola	cytosol	9.33	9.74
CDY32225	Canola	nucleus	3.7	7.06
CDY54261	Canola	nucleus	2.37	6.96
CDY70526	Canola	nucleus	0.74	5.88
CDY49974	Canola	nucleus	0.74	5.88

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.70.2570	Gene3D:3.30.70.3380	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
GO:A0A078I4I2	UniProt:A0A078I4I2	EnsemblPlants:CDY44781	ProteinID:CDY44781	ProteinID:CDY44781.1	InterPro:EF-4
InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0045727	EnsemblPlantsGene:GSBRNA2T00080782001
InterPro:GUFP	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR038363	InterPro:LepA_CTD	InterPro:LepA_C_sf
InterPro:LepA_IV	HAMAP:MF_00071	HAMAP:MF_03138	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679
PFAM:PF03144	PFAM:PF06421	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43512
PANTHER:PTHR43512:SF1	SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01393	InterPro:Transl_B-barrel_sf	UniParc:UPI0004EE30F7	SEG:seg

Description

BnaC02g01060DTranslation factor GUF1 homolog, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078I4I2]

Coordinates

chrLK032601:-:74647..79133

Molecular Weight (calculated)

75168.0 Da

IEP (calculated)

6.448

GRAVY (calculated)

-0.143

Length

675 amino acids

Sequence
(BLAST)

001: MAMAYAMDLS PPTFFSSLTP SSSSPFRRLS TLPISTFHRH SNRKLHILCQ ATAGTQPQSQ SNLSARSGQD RLLKVPISKV RNFSIIAHID HGKSTLADKL
101: LQVTGTVQNR DMKEQFLDNM DLERERGITI KLQAARMRYV YEDTPYCLNL IDTPGHVDFS YEVSRSLAAC EGALLVVDAS QGVEAQTLAN VYLALENNLE
201: IIPVVNKIDL PGAEPEQVLR EIEEVIGLDC SKAILCSAKE GIGITEILNA IVERIPPPPE TADKPFRALI FDSYYDPYRG VIVYFRVIDG KVKKGDRILF
301: MASGKDYFAD EIGVLSPNQI QVDELYAGEV GYISASIRSV ADARVGDTIT NFSRKAESSL PGYEEATPMV FCGLFPVDAD QFPDLRDALE KLQLNDAALK
401: FEPETSSAMG FGFRCGFLGL LHMEIVQERL EREYNLNLIT TAPSVVYKVH TVNGDTTMCS NPSLLPQPGL RKSVEEPYVK IELLTPKDYI GALMELAQDR
501: RGEFKEMKYI AENRASLLYE LPLAEMVGDF FDQLKSRTKG YASMEYSVIG YRESDLIKLD ILINAELVEP LSTIVHRDKA YSVGRALTQK LKELIPRQMF
601: KVPIQACIGS KVIASEALSA IRKDVLAKCY GGDISRKKKL LKKQAAGKKR MKAIGRVDVP QEAFMAVLKL EKEVL

Best Arabidopsis Sequence Match ( AT5G08650.1 )
(BLAST)

001: MAMASAMDLS SPPTFFLSGT STSSPSLRRL SSISVSGFRR HSNRKLQILC QATAGTEPQS GLSVSGSKLA ARSGQDRLLK VPISNIRNFS IIAHIDHGKS
101: TLADKLLQVT GTVQNRDMKE QFLDNMDLER ERGITIKLQA ARMRYVYEDT PFCLNLIDTP GHVDFSYEVS RSLAACEGAL LVVDASQGVE AQTLANVYLA
201: LENNLEIIPV LNKIDLPGAE PEKVLREIEE VIGLDCSKAI FCSAKEGIGI TEILDAIVQR IPAPLDTAGK PLRALIFDSY YDPYRGVIVY FRVIDGKVKK
301: GDRIFFMASG KDYFADEVGV LSPNQIQVDE LYAGEVGYIA ASVRSVADAR VGDTITHYSR KAESSLPGYE EATPMVFCGL FPVDADQFPD LRDALEKLQL
401: NDAALKFEPE TSSAMGFGFR CGFLGLLHME IVQERLEREY NLNLITTAPS VVYRVNSVNG DTTLCSNPSR LPDPGQRKSV EEPYVKIELL TPKDYIGALM
501: ELAQERRGEF KEMKYIAENR ASILYELPLA EMVGDFFDQL KSRTKGYASM EYSVIGYRES DLIKLDILIN AEMVEPLSTI VHRDKAYSVG RALTQKLKEL
601: IPRQMFKVPI QACIGSKVIA SEALSAIRKD VLAKCYGGDI SRKKKLLKKQ AAGKKRMKAI GRVDVPQEAF MAVLKLEREV L

Arabidopsis Description

Translation factor GUF1 homolog, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178USI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.