Factsheet for PGSC0003DMT400070154

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g015450.2.1	Tomato	nucleus	98.53	98.68
GSMUA_Achr3P07220_001	Banana	cytosol, nucleus, plastid	71.85	86.88
VIT_07s0031g03050.t01	Wine grape	plastid	82.4	82.65
KRH53996	Soybean	plasma membrane	81.52	80.93
HORVU6Hr1G025120.1	Barley	cytosol	12.76	80.56
CDY44781	Canola	plastid	79.62	80.44
AT5G08650.1	Thale cress	plastid	79.77	79.88
CDY40739	Canola	plastid	79.91	79.68
OQU84405	Sorghum	plastid	78.59	79.64
Bra028651.1-P	Field mustard	plastid	79.62	79.39
Zm00001d053861_P005	Maize	plastid	78.01	79.17
TraesCS6B01G159200.1	Wheat	plastid	76.39	77.76
TraesCS6D01G120800.1	Wheat	plastid	76.39	77.76
TraesCS6A01G130900.1	Wheat	plastid	76.1	77.46
KRH63943	Soybean	plastid	81.23	73.87
HORVU6Hr1G025110.1	Barley	plastid	57.62	73.6
PGSC0003DMT400034344	Potato	mitochondrion	46.04	47.65
PGSC0003DMT400024321	Potato	mitochondrion	23.9	24.47
PGSC0003DMT400066962	Potato	mitochondrion	19.06	17.11
PGSC0003DMT400012076	Potato	cytosol, plastid	17.45	15.12
PGSC0003DMT400007735	Potato	cytosol	18.33	12.22
PGSC0003DMT400078978	Potato	cytosol	15.4	10.64

Protein Annotations

EntrezGene:102585946	Gene3D:2.40.30.10	Gene3D:3.30.70.2570	Gene3D:3.30.70.3380	Gene3D:3.30.70.870	Gene3D:3.40.50.300
MapMan:35.1	InterPro:EF-4	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0019904	GO:GO:0045727	InterPro:GUFP	InterPro:G_TR_CS	InterPro:IPR000795
InterPro:IPR038363	InterPro:LepA_CTD	InterPro:LepA_C_sf	InterPro:LepA_IV	UniProt:M1CLR3	HAMAP:MF_00071
HAMAP:MF_03138	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF06421
EnsemblPlantsGene:PGSC0003DMG400027268	PGSC:PGSC0003DMG400027268	EnsemblPlants:PGSC0003DMT400070154	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR43512	PANTHER:PTHR43512:SF1	SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980
InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01393	InterPro:Transl_B-barrel_sf	UniParc:UPI00029670BA
RefSeq:XP_006350216.1	SEG:seg	:	:	:	:

Description

GTP-binding protein lepa [Source:PGSC_GENE;Acc:PGSC0003DMG400027268]

Coordinates

chr4:-:9720746..9735315

Molecular Weight (calculated)

76741.7 Da

IEP (calculated)

7.493

GRAVY (calculated)

-0.234

Length

682 amino acids

Sequence
(BLAST)

001: MATANFCRPK FIHHYHHQHQ NCFNLPTNLY FSNHLKSKRS DGAQSVRRRR QRWRSSLRVH CQAAATDIEA TARAGKDRLL KVPISNIRNF SIIAHIDHGK
101: STLADKLLQM TGTVESRDMK EQFLDNMDLE RERGITIKLQ AARMRFIYEN EPYCLNLIDT PGHVDFSYEV SRSLAACEGA LLVVDASQGV EAQTLANVYL
201: ALENNLEIIP VLNKIDLPGA DPARVCQEIE EIVGLDCSNA IYTSAKEGIG ITEILNAIVQ RIPPPRDTAE RPLRALIFDS YYDPYRGVIV YFRIIDGTIK
301: KGDRVLFMAS GKDYYADELG VLSPNQLQVD QLYAGEVGFL SASIRSVADA RVGDTITHFQ RKAEQSLPGY KEATPMVFCG LFPVDADQFS ELRDALEKLQ
401: LNDAALKFEP ETSSAMGFGF RCGFLGLLHM EIVQERLERE YNLSLITTAP SVVYRVNCID GDTVECSNPS LLPEPGNRRS IEEPFVKIEL LTPKEYIGAL
501: MELAQDRRGI FKEMKYITEN RASIIYELPL AEMVGDFFDQ LKSRSKGYAS MEYNFIGYTE SDLIKLDILI NGDRVEPLAT IVHKDKAYSV GRALTQKLKE
601: LIPRQMFKVP IQATIGSKVI ASEAISAIRK DVLAKCYGGD ISRKKKLLKK QAEGKKRMKA IGKVDVPQEA FMAVLKLEKE VL

Best Arabidopsis Sequence Match ( AT5G08650.1 )
(BLAST)

001: MAMASAMDLS SPPTFFLSGT STSSPSLRRL SSISVSGFRR HSNRKLQILC QATAGTEPQS GLSVSGSKLA ARSGQDRLLK VPISNIRNFS IIAHIDHGKS
101: TLADKLLQVT GTVQNRDMKE QFLDNMDLER ERGITIKLQA ARMRYVYEDT PFCLNLIDTP GHVDFSYEVS RSLAACEGAL LVVDASQGVE AQTLANVYLA
201: LENNLEIIPV LNKIDLPGAE PEKVLREIEE VIGLDCSKAI FCSAKEGIGI TEILDAIVQR IPAPLDTAGK PLRALIFDSY YDPYRGVIVY FRVIDGKVKK
301: GDRIFFMASG KDYFADEVGV LSPNQIQVDE LYAGEVGYIA ASVRSVADAR VGDTITHYSR KAESSLPGYE EATPMVFCGL FPVDADQFPD LRDALEKLQL
401: NDAALKFEPE TSSAMGFGFR CGFLGLLHME IVQERLEREY NLNLITTAPS VVYRVNSVNG DTTLCSNPSR LPDPGQRKSV EEPYVKIELL TPKDYIGALM
501: ELAQERRGEF KEMKYIAENR ASILYELPLA EMVGDFFDQL KSRTKGYASM EYSVIGYRES DLIKLDILIN AEMVEPLSTI VHRDKAYSVG RALTQKLKEL
601: IPRQMFKVPI QACIGSKVIA SEALSAIRKD VLAKCYGGDI SRKKKLLKKQ AAGKKRMKAI GRVDVPQEAF MAVLKLEREV L

Arabidopsis Description

Translation factor GUF1 homolog, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178USI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.