Factsheet for PGSC0003DMT400034344

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g058880.2.1	Tomato	mitochondrion	97.88	97.73
VIT_14s0108g00130.t01	Wine grape	mitochondrion, plastid	85.74	82.97
GSMUA_Achr10P...	Banana	mitochondrion	83.31	81.33
KRH40434	Soybean	mitochondrion	82.85	80.89
Os06t0144800-01	Rice	mitochondrion	78.15	77.68
EER89181	Sorghum	mitochondrion	77.85	77.14
Bra028444.1-P	Field mustard	mitochondrion	77.24	77.0
AT5G39900.1	Thale cress	mitochondrion	77.09	76.62
TraesCS4A01G386100.3	Wheat	mitochondrion	76.63	75.83
HORVU7Hr1G019550.9	Barley	mitochondrion	76.63	75.6
TraesCS7D01G081700.2	Wheat	mitochondrion	76.33	75.53
TraesCS7A01G087200.1	Wheat	mitochondrion	76.33	75.53
Zm00001d000213_P001	Maize	mitochondrion	77.24	74.85
CDX67441	Canola	plastid	77.24	74.2
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	76.63	73.4
KRH00796	Soybean	nucleus	53.26	53.42
PGSC0003DMT400070154	Potato	plastid	47.65	46.04
PGSC0003DMT400024321	Potato	mitochondrion	22.91	22.67
PGSC0003DMT400066962	Potato	mitochondrion	17.75	15.39
PGSC0003DMT400012076	Potato	cytosol, plastid	16.69	13.98
PGSC0003DMT400007735	Potato	cytosol	19.58	12.61
PGSC0003DMT400078978	Potato	cytosol	16.09	10.74

Protein Annotations

EntrezGene:102603343	Gene3D:2.40.30.10	Gene3D:3.30.70.2570	Gene3D:3.30.70.3380	Gene3D:3.30.70.870	Gene3D:3.40.50.300
MapMan:35.1	InterPro:EF-4	InterPro:EFG_III/V	InterPro:EFG_V-like	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005759	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787
GO:GO:0019538	GO:GO:0043022	GO:GO:0045727	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR038363
InterPro:LepA_CTD	InterPro:LepA_C_sf	InterPro:LepA_IV	UniProt:M1B0I3	HAMAP:MF_00071	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF00679	PFAM:PF06421	EnsemblPlantsGene:PGSC0003DMG400013207	PGSC:PGSC0003DMG400013207	EnsemblPlants:PGSC0003DMT400034344
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43512	PANTHER:PTHR43512:SF3	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01393
InterPro:Transl_B-barrel_sf	UniParc:UPI0002965E85	RefSeq:XP_006342295.1	RefSeq:XP_006342296.1	RefSeq:XP_015161988.1	SEG:seg

Description

GTP-binding protein lepA [Source:PGSC_GENE;Acc:PGSC0003DMG400013207]

Coordinates

chr3:-:17331990..17341319

Molecular Weight (calculated)

72925.8 Da

IEP (calculated)

8.383

GRAVY (calculated)

-0.169

Length

659 amino acids

Sequence
(BLAST)

001: MTTFKRASRA LTSKLAAIYT CNFHPVTSLS HFSYTQNASF CSRPRQNNKG STIDLNQYPS DNIRNFSIIA HVDHGKSTLA DRLLELTGTI RKGHGQPQYL
101: DKLQVERERG ITVKAQTATM FHRHKFLGSD TDFLLNLIDT PGHVDFSYEV SRSLAACQGA LLVVDAAQGV QAQTVANFYL AFESNLAIIP VINKIDQPTA
201: DPDRVKAQLK SMFDLNPSDV LLTSAKTGLG LEQVLPAAIE RIPPPPGKST SPLRMLLLDS YYDEYKGVIC HVSIVDGALH KGDKICSAAT GQSYEVSDVG
301: IMHPELVATG ILLTGQVGYI VSGMRSTKEA RVGDTLHHTR TVIQPLPGFK PAKHMVFSGL YPADGSDFEA LNHAIERLTC NDASVSVTKE SSTALGLGFR
401: CGFLGLLHMD VFHQRLEQEH GAHVISTVPT VPYIFEYSDG SKLQVQNPAA LPSNPKNRLI ACWEPTVLAT IIIPSEYVGS VITLCAERRG EQLEYSFIDS
501: QRAFMKYRMP LREIVVDFYN ELKSITSGYA SFDYEDSEYQ ASDLVKLDIL LNGQPVDAMA TIVHKSKAPR VGRELVEKLK TFIDRQMFEI IIQAAIGSKV
601: IARETLSAMR KNVLAKCYGG DVTRKRKLLE KQKEGKKRMK RVGSVDIPQE AFHELLKVS

Best Arabidopsis Sequence Match ( AT5G39900.1 )
(BLAST)

001: MGSMYRASKT LKSSRQALSI LFNSLNSNRQ NPTCIGLYQA YGFSSDSRQS SKEPTIDLTK FPSEKIRNFS IIAHIDHGKS TLADRLMELT GTIKKGHGQP
101: QYLDKLQVER ERGITVKAQT ATMFYENKVE DQEASGYLLN LIDTPGHVDF SYEVSRSLSA CQGALLVVDA AQGVQAQTVA NFYLAFEANL TIVPVINKID
201: QPTADPERVK AQLKSMFDLD TEDVLLVSAK TGLGLEHVLP AVIERIPPPP GISESPLRML LFDSFFNEYK GVICYVSVVD GMLSKGDKVS FAASGQSYEV
301: LDVGIMHPEL TSTGMLLTGQ VGYIVTGMRT TKEARIGDTI YRTKTTVEPL PGFKPVRHMV FSGVYPADGS DFEALGHAME KLTCNDASVS VAKETSTALG
401: MGFRCGFLGL LHMDVFHQRL EQEYGTQVIS TIPTVPYTFE YSDGSKLQVQ NPAALPSNPK YRVTASWEPT VIATIILPSE YVGAVINLCS DRRGQQLEYT
501: FIDAQRVFLK YQLPLREIVV DFYDELKSIT SGYASFDYED AEYQASDLVK LDILLNGQAV DALATIVHKQ KAYRVGKELV EKLKNYIERQ MFEVMIQAAI
601: GSKIIARDTI SAMRKNVLAK CYGGDITRKK KLLEKQKEGK KRMKRVGSVD IPHEAFQQIL KVS

Arabidopsis Description

Translation factor GUF1 homolog, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLE4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.