Factsheet for Bra028444.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67441	Canola	plastid	99.09	95.48
AT5G39900.1	Thale cress	mitochondrion	94.7	94.42
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	98.03	94.19
PGSC0003DMT400034344	Potato	mitochondrion	77.0	77.24
KRH40434	Soybean	mitochondrion	78.52	76.89
Solyc03g058880.2.1	Tomato	mitochondrion	76.7	76.82
VIT_14s0108g00130.t01	Wine grape	mitochondrion, plastid	78.37	76.06
EER89181	Sorghum	mitochondrion	75.19	74.74
Os06t0144800-01	Rice	mitochondrion	74.89	74.66
GSMUA_Achr10P...	Banana	mitochondrion	76.1	74.52
TraesCS4A01G386100.3	Wheat	mitochondrion	74.89	74.32
HORVU7Hr1G019550.9	Barley	mitochondrion	75.04	74.25
TraesCS7D01G081700.2	Wheat	mitochondrion	74.74	74.17
TraesCS7A01G087200.1	Wheat	mitochondrion	74.58	74.02
Zm00001d000213_P001	Maize	mitochondrion	75.04	72.94
KRH00796	Soybean	nucleus	49.77	50.08
Bra028651.1-P	Field mustard	plastid	47.5	45.91
Bra022824.1-P	Field mustard	mitochondrion	22.84	23.93
Bra021694.1-P	Field mustard	mitochondrion	22.54	22.85
Bra008811.1-P	Field mustard	plastid	23.0	22.55
Bra004884.1-P	Field mustard	plastid	18.0	15.76
Bra027021.1-P	Field mustard	plastid	17.4	14.84
Bra010782.1-P	Field mustard	cytosol	18.76	14.71
Bra017279.1-P	Field mustard	cytosol	18.61	14.01
Bra020542.1-P	Field mustard	cytosol	19.21	13.44
Bra010781.1-P	Field mustard	cytosol	10.44	12.5
Bra024798.1-P	Field mustard	cytosol	18.46	12.4
Bra030642.1-P	Field mustard	cytosol	18.46	12.36
Bra033543.1-P	Field mustard	cytosol	15.88	11.54
Bra033895.1-P	Field mustard	cytosol, nucleus, plastid	6.35	8.73

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.70.2570	Gene3D:3.30.70.3380	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
EnsemblPlantsGene:Bra028444	EnsemblPlants:Bra028444.1	EnsemblPlants:Bra028444.1-P	InterPro:EF-4	InterPro:EFG_III/V	InterPro:EFG_V-like
InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0005759	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538	GO:GO:0043022	GO:GO:0045727
InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR038363	InterPro:LepA_CTD	InterPro:LepA_C_sf	InterPro:LepA_IV
UniProt:M4EI29	HAMAP:MF_00071	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF06421	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43512	PANTHER:PTHR43512:SF3
SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
TIGRFAMs:TIGR01393	InterPro:Transl_B-barrel_sf	UniParc:UPI00025432AE	SEG:seg	:	:

Description

AT5G39900 (E=0.0) | GTP binding / GTPase/ translation elongation factor

Coordinates

chrA02:-:359510..361810

Molecular Weight (calculated)

73431.6 Da

IEP (calculated)

8.471

GRAVY (calculated)

-0.190

Length

661 amino acids

Sequence
(BLAST)

001: MGSMYRASKT LKSSRQAFSL LFNPAKPNRR DPLRVGSQQA YGFSSDSKQK KPAVDLTQFP SDKIRNFSII AHIDHGKSTL ADRLMELTGT IKKGHGQPQY
101: LDKLQVERER GITVKAQTAT MFYENKVKDE EASGFLLNLI DTPGHVDFSY EVSRSLSACQ GALLVVDAAQ GVQAQTVANF YLAFEANLTI VPVINKIDQP
201: TADPDRVKAQ LKSMFDLDTD EVLLVSAKTG LGLEHVLPAV IERIPPPPGI SDSPLRMLLF DSFFNEYKGV VCYVSVVDGM LRKGDKVSFA ATGQSYEVLD
301: VGIMHPELTS TGMLLTGQVG YIVTGMRTTK EARIGDTIYR TKTTVEPLPG FKPVRHMVFS GVYPADGSDF EALTHAIEKL TCNDASVSVA KETSAALGMG
401: FRCGFLGLLH MDVFHQRLEQ EYGTQVISTI PTVPYTFEYS DGSKLQVQNP AALPSNPKYR VTASWEPTVI ATIILPSEYV GAVINLCSDR RGQQLEYTFI
501: DAQRVFLKYQ LPLREIVVDF YDELKSITSG YASFDYEDAE YQKSDLVKLD ILLNGQAVDA LATIVHNQKA YRVGKELVEK LKNFIERQMF EVMIQAAIGS
601: KIIARDTISA MRKNVLAKCY GGDITRKKKL LEKQKEGKKR MKRVGSVDIP HEAFQQILKV S

Best Arabidopsis Sequence Match ( AT5G39900.1 )
(BLAST)

001: MGSMYRASKT LKSSRQALSI LFNSLNSNRQ NPTCIGLYQA YGFSSDSRQS SKEPTIDLTK FPSEKIRNFS IIAHIDHGKS TLADRLMELT GTIKKGHGQP
101: QYLDKLQVER ERGITVKAQT ATMFYENKVE DQEASGYLLN LIDTPGHVDF SYEVSRSLSA CQGALLVVDA AQGVQAQTVA NFYLAFEANL TIVPVINKID
201: QPTADPERVK AQLKSMFDLD TEDVLLVSAK TGLGLEHVLP AVIERIPPPP GISESPLRML LFDSFFNEYK GVICYVSVVD GMLSKGDKVS FAASGQSYEV
301: LDVGIMHPEL TSTGMLLTGQ VGYIVTGMRT TKEARIGDTI YRTKTTVEPL PGFKPVRHMV FSGVYPADGS DFEALGHAME KLTCNDASVS VAKETSTALG
401: MGFRCGFLGL LHMDVFHQRL EQEYGTQVIS TIPTVPYTFE YSDGSKLQVQ NPAALPSNPK YRVTASWEPT VIATIILPSE YVGAVINLCS DRRGQQLEYT
501: FIDAQRVFLK YQLPLREIVV DFYDELKSIT SGYASFDYED AEYQASDLVK LDILLNGQAV DALATIVHKQ KAYRVGKELV EKLKNYIERQ MFEVMIQAAI
601: GSKIIARDTI SAMRKNVLAK CYGGDITRKK KLLEKQKEGK KRMKRVGSVD IPHEAFQQIL KVS

Arabidopsis Description

Translation factor GUF1 homolog, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLE4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.