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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 20363867
plastid: 22908117
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400012076 Potato cytosol, plastid 98.86 98.86
VIT_00s1286g00020.t01 Wine grape cytosol, mitochondrion 24.78 92.42
Os04t0538166-00 Rice cytosol, mitochondrion, peroxisome 16.26 90.78
Os04t0538100-01 Rice plasma membrane 42.57 86.79
CDY31838 Canola plastid 84.37 85.68
CDY46917 Canola plastid 84.37 85.68
Bra027021.1-P Field mustard plastid 84.24 85.55
VIT_00s0323g00080.t01 Wine grape plastid 84.24 85.55
AT1G62750.1 Thale cress plastid 85.01 85.44
GSMUA_Achr5P13570_001 Banana mitochondrion 77.51 84.25
KRH57341 Soybean nucleus, plastid 83.48 84.23
KRH04069 Soybean nucleus, plastid 83.48 83.48
Zm00001d025948_P001 Maize plastid 79.54 81.51
Zm00001d002822_P001 Maize plastid 79.03 80.88
TraesCS2B01G404600.1 Wheat plastid 78.78 80.73
TraesCS2A01G387000.1 Wheat mitochondrion, plastid 78.65 80.6
TraesCS2D01G383800.1 Wheat mitochondrion, plastid 78.65 80.6
EES12566 Sorghum plastid 78.91 80.13
HORVU2Hr1G092180.1 Barley plastid 77.51 79.95
Solyc01g090690.2.1 Tomato plastid 40.53 41.97
Solyc08g062910.2.1 Tomato cytosol, extracellular, nucleus, unclear 20.84 21.3
Solyc08g062920.2.1 Tomato nucleus, plastid 22.11 21.01
Solyc07g053470.2.1 Tomato mitochondrion 16.14 19.07
Solyc03g058190.2.1 Tomato plastid 15.5 18.15
Solyc07g007210.2.1 Tomato nucleus 20.84 17.73
Solyc04g015450.2.1 Tomato nucleus 15.25 17.62
Solyc11g071770.1.1 Tomato cytosol 22.36 17.19
Solyc03g058880.2.1 Tomato mitochondrion 14.1 16.82
Protein Annotations
MapMan:17.7.4.3Gene3D:2.40.30.10Gene3D:3.30.230.10Gene3D:3.30.70.240Gene3D:3.30.70.870Gene3D:3.40.50.300
InterPro:EFG_IIIInterPro:EFG_III/VInterPro:EFG_VInterPro:EFG_V-likeInterPro:EFTu-like_2InterPro:EF_G_plantC
GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003746GO:GO:0003824
GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006412GO:GO:0006414GO:GO:0008135GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0016787GO:GO:0019538
InterPro:G_TR_CSInterPro:IPR000795InterPro:IPR014721UniProt:K4CNS6HAMAP:MF_00054_BHAMAP:MF_03063
InterPro:P-loop_NTPasePFAM:PF00009PFAM:PF00679PFAM:PF03144PFAM:PF03764PFAM:PF14492
PRINTS:PR00315ScanProsite:PS00301PFscan:PS51722PANTHER:PTHR43261InterPro:Ribosomal_S5_D2-typ_foldInterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00838SMART:SM00889SUPFAM:SSF50447SUPFAM:SSF52540SUPFAM:SSF54211SUPFAM:SSF54980
InterPro:Small_GTP-bd_domEnsemblPlantsGene:Solyc08g079180.2EnsemblPlants:Solyc08g079180.2.1InterPro:TF_GTP-bd_domTIGRFAMs:TIGR00231TIGRFAMs:TIGR00484
InterPro:Transl_B-barrel_sfInterPro:Transl_elong_EFG/EF2InterPro:Transl_elong_EFG/EF2_IVUniParc:UPI000276B0F3SEG:seg:
Description
Elongation factor G, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G62750) UniProtKB/Swiss-Prot;Acc:Q9SI75]
Coordinates
chr8:-:62810652..62816626
Molecular Weight (calculated)
86503.8 Da
IEP (calculated)
5.293
GRAVY (calculated)
-0.230
Length
787 amino acids
Sequence
(BLAST)
001: MAAESVTRMS SAASSLCNFN GSKRPVPVSN RVTSSRRNRC VKLQSLASAS MSEFFGSSRV FSVNGSRSLG LSQKTRKNGF SVIAMAAAEE EKRTVPLKDY
101: RNIGIMAHID AGKTTTTERV LYYTGRNYKI GEVHEGTATM DWMEQEQERG ITITSAATTT FWNKHRINII DTPGHVDFTL EVERALRVLD GAICLFDSVA
201: GVEPQSETVW RQADKYGVPR ICFVNKMDRL GANFFRTRDM IVTNLGAKPL VIQIPIGAED TFKGLVDLVM MKAIVWSGEE LGAKFSYEDI PADLQELAEE
301: YRALMIETVV ELDDDVMEKY LEGVEPDEAT IKQLIRKGTI SGNFVPVLCG SAFKNKGVQP LLDAVVDYLP SPVDVPPMNG TDPDNPEVII ERAPSDDEPF
401: TGLAFKIMND PFVGSLTFVR VYSGKLSAGS YVLNANKGRK ERIGRLLEMH ANSREDVKTA LTGDIVALAG LKDTITGETL SDPEKPVVLE RMDFPDPVIK
501: VAIEPKTKAD IDKMAQGLIK LAQEDPSFHF SRDEEINQTV IEGMGELHLE IIVDRLKREF KVEANVGAPQ VNYRESISRN SEVKYVHKKQ SGGSGQFADI
601: TVRFEPMEAG GGYEFKSEIK GGAVPKEYIP GVMKGLEECM SNGVLAGFPV VDVRAVLVDG SYHDVDSSVL AFQLAARGAF REGMRKAGPQ LLEPIMKVEV
701: VTPEEHLGDV IGDLNSRRGQ INSFGDKPGG LKVVDSLVPL AEMFNYVSTL RGMTKGRASY VMQLAKFDVV PQHIQNQLAK KEEAAAA
Best Arabidopsis Sequence Match ( AT1G62750.1 )
(BLAST)
001: MAADALRISS SSSGSLVCNL NGSQRRPVLL PLSHRATFLG LPPRASSSSI SSSIPQFLGT SRIGLGSSKL SQKKKQFSVF AAAEAEAKRA VPLKDYRNIG
101: IMAHIDAGKT TTTERILYYT GRNYKIGEVH EGTATMDWME QEQERGITIT SAATTTFWDK HRINIIDTPG HVDFTLEVER ALRVLDGAIC LFDSVAGVEP
201: QSETVWRQAD KYGVPRICFV NKMDRLGANF FRTRDMIVTN LGAKPLVLQI PIGAEDVFKG VVDLVRMKAI VWSGEELGAK FSYEDIPEDL EDLAQEYRAA
301: MMELIVDLDD EVMENYLEGV EPDEATVKRL VRKGTITGKF VPILCGSAFK NKGVQPLLDA VVDYLPSPVE VPPMNGTDPE NPEITIIRKP DDDEPFAGLA
401: FKIMSDPFVG SLTFVRVYSG KISAGSYVLN ANKGKKERIG RLLEMHANSR EDVKVALTGD IIALAGLKDT ITGETLSDPE NPVVLERMDF PDPVIKVAIE
501: PKTKADIDKM ATGLIKLAQE DPSFHFSRDE EMNQTVIEGM GELHLEIIVD RLKREFKVEA NVGAPQVNYR ESISKIAEVK YTHKKQSGGQ GQFADITVRF
601: EPLEAGSGYE FKSEIKGGAV PREYIPGVMK GLEECMSTGV LAGFPVVDVR ACLVDGSYHD VDSSVLAFQL AARGAFREGM RKAGPRMLEP IMRVEVVTPE
701: EHLGDVIGDL NSRRGQINSF GDKPGGLKVV DSLVPLAEMF QYVSTLRGMT KGRASYTMQL AKFDVVPQHI QNQLSSKDQE VAA
Arabidopsis Description
CPEFGElongation factor G, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI75]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.