Factsheet for VIT_02s0012g01900.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038370	Potato	cytosol	53.74	77.07
KRH74352	Soybean	plastid	75.85	73.6
KRH39581	Soybean	mitochondrion, plastid	74.83	72.61
CDY64420	Canola	plastid	69.73	70.69
Bra023250.1-P	Field mustard	plastid	69.73	70.45
CDY12254	Canola	plastid	69.39	70.1
AT1G32220.1	Thale cress	plastid	70.07	69.59
Solyc08g076450.2.1	Tomato	plastid	72.45	69.16
PGSC0003DMT400038371	Potato	plastid	72.11	68.61
GSMUA_Achr4P12290_001	Banana	plastid	72.45	67.19
Zm00001d000123_P003	Maize	plastid	69.39	66.67
Os04t0403500-01	Rice	plastid	70.07	66.03
EES10717	Sorghum	plastid	67.69	65.03
TraesCS2B01G306800.1	Wheat	plastid	67.35	63.87
TraesCS2A01G290300.1	Wheat	plastid	67.01	63.55
TraesCS2D01G288200.1	Wheat	plastid	66.67	63.23
HORVU2Hr1G071860.2	Barley	plastid	67.01	53.53
VIT_04s0008g07400.t01	Wine grape	cytosol	37.07	36.82

Protein Annotations

EntrezGene:100247104	wikigene:100247104	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CBI33841	ProteinID:CBI33841.3
UniProt:D7TTS6	EMBL:FN596247	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0050662	GO:GO:0055114
GO:GO:1901006	EntrezGene:LOC100247104	wikigene:LOC100247104	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460
PANTHER:PTHR12126	PANTHER:PTHR12126:SF5	SUPFAM:SSF51735	TIGR:TC69622	UniParc:UPI0001BE4441	ArrayExpress:VIT_02s0012g01900
EnsemblPlantsGene:VIT_02s0012g01900	EnsemblPlants:VIT_02s0012g01900.t01	unigene:Vvi.7823	RefSeq:XP_002278389	RefSeq:XP_002278389.2	SEG:seg

Description

No Description!

Coordinates

chr2:+:8366158..8376968

Molecular Weight (calculated)

31576.7 Da

IEP (calculated)

6.146

GRAVY (calculated)

0.059

Length

294 amino acids

Sequence
(BLAST)

001: MLSLSSISPL KTSPCRTHFP LPSHHRYSFC RFGVRSSYAE AGVKGDSKSA TIDVEADVKS ERVVVLGGNG FVGSAICKAA VSKGIEVTSL SRSGRPSQSS
101: SWVDQVNWVT GDVFYVNWDE VLVGATAVVS TLGGFGSEEQ MKRINGEANV LAVGAAKDYG VPKFILISVH DYNLPQFLLE SGYFTGKRKA ESEVLSKYPN
201: SGVVLRPGFI YGKRRVDGFE IPLDLIGEPL EKILRATENL TRPLSALPAS DLILAPPVSV DDVALAAVNA ITDDDFFGIF TIEQIKEAAA KVSV

Best Arabidopsis Sequence Match ( AT1G32220.1 )
(BLAST)

001: MTSFLSFSAI SAHPPTFSGA SFRPRSFSPR LFKSCVKCTY AEAGLSSASW SAPIDIVADV KSERVVVLGG NGFVGSAICK AAISNGIEVV SVSRSGRPNF
101: EDSWLDQVTW VTGDVFYLNW DEVLLGATAV VSTIGGFGNE EQMKRINGEA NVTAVNAAKD FGVPKFVLIT VHDYNLPPFI LSNGYFTGKR NAEAELLSKY
201: PTSGVVLRPG FIYGKRKVNG IEVPLDLVGE PLDKIYDSAE RFIRPLRSLP ASDLILAPPV NVDDLALAVI NAVKDDDFFG IFTIEQIKEA AAKMRA

Arabidopsis Description

Uncharacterized protein At1g32220, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FVR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.