Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89880 | Canola | cytosol | 39.53 | 80.95 |
| KRH22415 | Soybean | nucleus | 61.05 | 62.13 |
| Os03t0333400-01 | Rice | plastid | 59.3 | 61.82 |
| PGSC0003DMT400047280 | Potato | extracellular, plastid | 58.14 | 59.52 |
| GSMUA_Achr1P08890_001 | Banana | plastid | 62.21 | 59.12 |
| KRH26922 | Soybean | nucleus | 59.3 | 58.96 |
| TraesCS4B01G170800.1 | Wheat | plastid | 56.98 | 58.33 |
| Zm00001d047532_P001 | Maize | plastid | 55.81 | 57.48 |
| TraesCS4D01G172800.1 | Wheat | plastid | 56.98 | 57.31 |
| TraesCS4A01G134100.1 | Wheat | plastid | 56.98 | 56.98 |
| Zm00001d029049_P001 | Maize | plastid | 55.81 | 56.47 |
| EER94911 | Sorghum | plastid | 54.07 | 54.07 |
| VIT_12s0059g01810.t01 | Wine grape | mitochondrion, plastid | 63.37 | 52.66 |
| AT1G03600.1 | Thale cress | plastid | 52.91 | 52.3 |
| CDY72088 | Canola | plastid | 52.91 | 52.0 |
| CDY51388 | Canola | plastid | 52.33 | 51.72 |
| CDY15467 | Canola | plastid | 51.74 | 51.45 |
| CDY70668 | Canola | plastid | 52.33 | 51.43 |
| Bra033412.1-P | Field mustard | plastid | 52.33 | 51.43 |
| Bra030537.1-P | Field mustard | plastid | 51.16 | 51.16 |
| Solyc07g054290.1.1 | Tomato | plastid | 58.14 | 50.76 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P00450_001 | EnsemblPlants:GSMUA_Achr2T00450_001 | EnsemblPlantsGene:GSMUA_Achr2G00450_001 | Gene3D:1.20.58.810 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010207 | GO:GO:0015979 | GO:GO:0016043 | HAMAP:MF_01481 |
| InterPro:IPR038450 | InterPro:PSII_Pbs27 | InterPro:PSII_Pbs27_sf | PANTHER:PTHR34041 | PANTHER:PTHR34041:SF1 | PFAM:PF13326 |
| SEG:seg | UniParc:UPI000296D1D6 | UniProt:M0S3Y6 | MapMan:1.1.1.3.8 | : | : |
Description
photosystem II 11 kD protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G00450_001]
Coordinates
chr2:-:3177185..3177870
Molecular Weight (calculated)
18155.9 Da
IEP (calculated)
10.225
GRAVY (calculated)
0.036
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MACSSLLAAP TSLSSRPAAS PSPSLVATIA NAVPGSSQAV SRRELGVILS SSVALLLVPV PPSAFAASDE EYVRETADMI GKLRITIGMD KKDANVAAAV
101: AELREASNSW VAKYRREKAL LGRASFRDMY SALNAVSGHY ISFGPTSPIP AKRKTRILEE VDAAEKALIR GR
101: AELREASNSW VAKYRREKAL LGRASFRDMY SALNAVSGHY ISFGPTSPIP AKRKTRILEE VDAAEKALIR GR
001: MASASATATL LKPNLPPHKP TIIASSVSPP LPPPRRNHLL RRDFLSLAAT STLLTQSIQF LAPAPVSAAE DEEYIKDTSA VISKVRSTLS MQKTDPNVAD
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR
101: AVAELREASN SWVAKYRKEK ALLGKASFRD IYSALNAVSG HYVSFGPTAP IPAKRKARIL EEMETAEKAL TRGR
Arabidopsis Description
PSB27-1Photosystem II repair protein PSB27-H1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LR64]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.