Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14740 | Canola | cytosol, extracellular | 94.55 | 94.55 |
| AT2G40765.1 | Thale cress | cytosol, extracellular | 76.36 | 73.68 |
Protein Annotations
| EnsemblPlants:CDY06965 | EnsemblPlantsGene:GSBRNA2T00123271001 | GO:A0A078EXZ7 | ProteinID:CDY06965 | ProteinID:CDY06965.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EEA4D2 | MapMan:2.4.3.9 | : | : | : |
Description
BnaA04g23500D
Coordinates
chrLK031974:-:406203..407103
Molecular Weight (calculated)
5877.2 Da
IEP (calculated)
10.039
GRAVY (calculated)
0.207
Length
55 amino acids
Sequence
(BLAST)
(BLAST)
1: MTGGVIKLVK PKIQSVDIQA AAGWGIAAAA GAIWVVQPFD WIKKTFIDKP APEDK
1: MAGTSGLLNA VKPKIQTIDI QAAAGWGIAA AAGAIWVVQP FGWIKKTFID PPPTEEK
Arabidopsis Description
Putative uncharacterized protein At2g40765 [Source:UniProtKB/TrEMBL;Acc:Q94K78]
SUBAcon: [extracellular,cytosol]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.