Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88150 | Canola | cytosol | 86.83 | 63.12 |
| CDX88148 | Canola | cytosol | 79.02 | 61.36 |
| CDX80479 | Canola | cytoskeleton, cytosol, nucleus | 83.9 | 58.7 |
| CDY05382 | Canola | cytosol | 66.34 | 50.56 |
| AT5G25020.1 | Thale cress | cytosol | 59.51 | 45.35 |
| AT5G25010.1 | Thale cress | cytosol | 58.54 | 41.96 |
| AT5G24990.1 | Thale cress | cytosol | 59.51 | 41.5 |
| CDX78399 | Canola | nucleus, plastid | 56.59 | 38.28 |
| CDX70368 | Canola | cytosol, mitochondrion, nucleus, plastid | 56.59 | 38.28 |
| VIT_04s0008g07260.t01 | Wine grape | cytosol, nucleus, plastid | 53.66 | 36.07 |
| KRH52302 | Soybean | cytosol | 49.76 | 35.29 |
| KRH61636 | Soybean | cytosol | 50.24 | 34.68 |
| KRH15692 | Soybean | cytosol | 49.76 | 34.23 |
| Solyc08g006590.1.1 | Tomato | cytosol | 44.39 | 32.73 |
| PGSC0003DMT400067616 | Potato | cytosol | 45.37 | 32.07 |
| PGSC0003DMT400038272 | Potato | mitochondrion | 45.37 | 29.52 |
| Solyc08g068880.1.1 | Tomato | mitochondrion | 44.88 | 29.21 |
| KRH05337 | Soybean | cytosol | 38.54 | 29.15 |
| GSMUA_Achr5P04860_001 | Banana | plastid | 39.51 | 28.93 |
| GSMUA_Achr5P21900_001 | Banana | cytosol | 45.85 | 28.4 |
| GSMUA_Achr7P15920_001 | Banana | cytosol | 44.39 | 27.74 |
| TraesCS7A01G424300.1 | Wheat | cytosol | 40.0 | 25.62 |
| TraesCS7B01G325500.1 | Wheat | cytosol | 40.0 | 25.47 |
| TraesCS7D01G417100.2 | Wheat | cytosol, mitochondrion, nucleus | 39.51 | 25.23 |
| Zm00001d014641_P001 | Maize | cytosol, extracellular, nucleus | 39.51 | 24.92 |
| OQU76985 | Sorghum | cytosol, extracellular, nucleus | 39.02 | 24.62 |
| HORVU7Hr1G098100.1 | Barley | plastid | 40.49 | 23.45 |
| Zm00001d036506_P001 | Maize | extracellular, nucleus, plastid | 36.59 | 22.94 |
| CDY47711 | Canola | cytosol | 32.2 | 21.43 |
| CDY64695 | Canola | cytosol, golgi, nucleus | 20.49 | 13.21 |
| CDY10168 | Canola | nucleus | 31.71 | 11.52 |
| CDX78916 | Canola | mitochondrion | 28.29 | 8.08 |
| CDX99399 | Canola | mitochondrion | 28.29 | 8.08 |
| CDY01578 | Canola | mitochondrion | 27.8 | 7.96 |
| CDX98603 | Canola | mitochondrion | 27.8 | 7.94 |
| CDY23114 | Canola | mitochondrion | 27.32 | 7.8 |
| CDY13045 | Canola | mitochondrion | 27.32 | 7.8 |
| CDY58454 | Canola | cytosol | 28.78 | 7.7 |
| CDY41766 | Canola | nucleus | 28.78 | 7.53 |
| CDY41767 | Canola | extracellular, golgi | 3.41 | 7.37 |
| CDX67608 | Canola | cytosol | 25.85 | 7.34 |
| CDY07523 | Canola | cytosol | 25.37 | 7.2 |
| CDX78263 | Canola | cytosol | 24.88 | 7.06 |
| CDX73448 | Canola | cytosol | 24.88 | 7.06 |
| CDY04553 | Canola | cytosol | 24.39 | 6.84 |
| CDX71361 | Canola | cytosol | 24.39 | 6.82 |
| CDY02892 | Canola | cytosol | 23.9 | 6.76 |
| CDY69875 | Canola | cytosol | 3.41 | 1.52 |
| CDX98605 | Canola | cytosol | 0.49 | 0.22 |
| CDY47710 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX80480 | EnsemblPlantsGene:GSBRNA2T00133573001 | InterPro:EDR2_C | PANTHER:PTHR12136 | PANTHER:PTHR12136:SF88 | PFAM:PF07059 |
| ProteinID:CDX80480 | ProteinID:CDX80480.1 | UniParc:UPI0004EDBC16 | MapMan:35.1 | : | : |
Description
BnaC07g29640D
Coordinates
chrLK031821:-:826437..827305
Molecular Weight (calculated)
22475.8 Da
IEP (calculated)
10.007
GRAVY (calculated)
-0.177
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSPVDHSIP KPAIPEWITE TTNGGTARQV DLYTGINGWA SPPGDGFSVR SADYFTNKQK CPGGDYLLSL AGVDWLKSST KLGNILARPD NRVAHALRKA
101: QSLGRSQNGF IFAVNFHIPV KEHHHSRFKI VSQVVKGPWI VKAAAGQFGA FLVARTVKCT YHKGPNYFEV DVDTGSWPIL AALVRLLFEY SSKATTTTLV
201: ITGYE
101: QSLGRSQNGF IFAVNFHIPV KEHHHSRFKI VSQVVKGPWI VKAAAGQFGA FLVARTVKCT YHKGPNYFEV DVDTGSWPIL AALVRLLFEY SSKATTTTLV
201: ITGYE
001: MSPSKQRHRS STGENKSKPV RSASSSAIPE WITESTNGGS LRRVDPDTGT DGWASPPGDV FSLRSDSYLS KKQKTPAGDY LLSPAGMDWL KSSTKLENAL
101: ARPDNRVAHA LRKAQSRGQS LKSFIFAVNL QIPGKDHHSA VFYFATEEPI PSGSLLHRFI NGDDAFRNQR FKIVNRIVKG PWVVKAAVGN YSACLLGKAL
201: TCNYHRGPNY FEIDVDISSS AIATAILRLA LGYVTSVTID MGFLAEAQTE EELPERLIGA VRVCQMEMSS AFVVDAPPPQ QLPSQPCRTL SSAKVNHDED
301: ED
101: ARPDNRVAHA LRKAQSRGQS LKSFIFAVNL QIPGKDHHSA VFYFATEEPI PSGSLLHRFI NGDDAFRNQR FKIVNRIVKG PWVVKAAVGN YSACLLGKAL
201: TCNYHRGPNY FEIDVDISSS AIATAILRLA LGYVTSVTID MGFLAEAQTE EELPERLIGA VRVCQMEMSS AFVVDAPPPQ QLPSQPCRTL SSAKVNHDED
301: ED
Arabidopsis Description
At5g10750 [Source:UniProtKB/TrEMBL;Acc:Q9LEW4]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.