Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G24990.1 | Thale cress | cytosol | 89.96 | 82.31 |
| AT5G25010.1 | Thale cress | cytosol | 80.67 | 75.87 |
| CDY05382 | Canola | cytosol | 65.43 | 65.43 |
| CDX88148 | Canola | cytosol | 62.08 | 63.26 |
| Bra036529.1-P | Field mustard | cytosol | 63.2 | 59.65 |
| CDX80480 | Canola | cytosol | 45.35 | 59.51 |
| CDX80479 | Canola | cytoskeleton, cytosol, nucleus | 63.57 | 58.36 |
| Bra009807.1-P | Field mustard | cytosol | 61.71 | 56.66 |
| Bra009809.1-P | Field mustard | cytosol | 56.88 | 54.26 |
| CDX88150 | Canola | cytosol | 56.51 | 53.9 |
| AT5G10750.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 57.99 | 51.66 |
| KRH52302 | Soybean | cytosol | 51.67 | 48.1 |
| VIT_04s0008g07260.t01 | Wine grape | cytosol, nucleus, plastid | 53.53 | 47.21 |
| KRH61636 | Soybean | cytosol | 51.67 | 46.8 |
| KRH15692 | Soybean | cytosol | 51.3 | 46.31 |
| PGSC0003DMT400067616 | Potato | cytosol | 46.84 | 43.45 |
| KRH05337 | Soybean | cytosol | 41.26 | 40.96 |
| PGSC0003DMT400038272 | Potato | mitochondrion | 47.96 | 40.95 |
| Solyc08g068880.1.1 | Tomato | mitochondrion | 47.96 | 40.95 |
| GSMUA_Achr5P21900_001 | Banana | cytosol | 49.07 | 39.88 |
| Solyc08g006590.1.1 | Tomato | cytosol | 40.89 | 39.57 |
| GSMUA_Achr7P15920_001 | Banana | cytosol | 47.21 | 38.72 |
| GSMUA_Achr5P04860_001 | Banana | plastid | 40.15 | 38.57 |
| TraesCS7A01G424300.1 | Wheat | cytosol | 42.01 | 35.31 |
| TraesCS7D01G417100.2 | Wheat | cytosol, mitochondrion, nucleus | 42.01 | 35.2 |
| TraesCS7B01G325500.1 | Wheat | cytosol | 42.01 | 35.09 |
| Zm00001d014641_P001 | Maize | cytosol, extracellular, nucleus | 41.26 | 34.15 |
| OQU76985 | Sorghum | cytosol, extracellular, nucleus | 40.15 | 33.23 |
| Zm00001d036506_P001 | Maize | extracellular, nucleus, plastid | 38.66 | 31.8 |
| HORVU7Hr1G098100.1 | Barley | plastid | 41.26 | 31.36 |
| AT1G06050.1 | Thale cress | cytosol | 32.71 | 28.11 |
| AT5G45560.1 | Thale cress | mitochondrion | 33.46 | 12.52 |
| AT4G19040.2 | Thale cress | mitochondrion | 33.09 | 12.31 |
| AT5G35180.4 | Thale cress | cytosol | 31.23 | 10.36 |
| AT2G28320.1 | Thale cress | cytosol | 28.25 | 10.31 |
| AT3G54800.1 | Thale cress | cytosol | 26.02 | 9.55 |
Protein Annotations
| ArrayExpress:AT5G25020 | EnsemblPlants:AT5G25020.1 | EnsemblPlantsGene:AT5G25020 | EntrezGene:832572 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008289 | InterPro:EDR2_C | PANTHER:PTHR12136 | PANTHER:PTHR12136:SF88 | PFAM:PF07059 |
| ProteinID:AED93389.1 | RefSeq:AT5G25020 | RefSeq:AT5G25020-TAIR-G | RefSeq:NP_197884.1 | SEG:seg | TAIR:AT5G25020 |
| TAIR:AT5G25020.1 | UniParc:UPI000016257F | UniProt:F4KIL6 | MapMan:35.1 | : | : |
Description
Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT5G25020]
Coordinates
chr5:+:8618404..8619465
Molecular Weight (calculated)
29740.9 Da
IEP (calculated)
5.621
GRAVY (calculated)
-0.383
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQTETTTDD DNNNSKPAET ESTTTAPEWI TETINGGSFC HVDLETGTNG WASPPGNVFS LRSNNYFTPT KQKSPGGDYL LSLAAVDWLK STTKKLDHIL
101: SRPDNRVIHA LKTSQSSSFI FAVNFQVPGK EHYNLRFKIV SNVVKGPWVV KAAAGKFGAF VAGKAMKCSY HRGDNYFEVD VDISSSAIMT ALIRFMLGYV
201: TYLMVDIGFV VEAQTEEELP ERLIGGARIC HMELSSAFVI YDDVDGKKSS QQRRRMMGAA EGNHSEDED
101: SRPDNRVIHA LKTSQSSSFI FAVNFQVPGK EHYNLRFKIV SNVVKGPWVV KAAAGKFGAF VAGKAMKCSY HRGDNYFEVD VDISSSAIMT ALIRFMLGYV
201: TYLMVDIGFV VEAQTEEELP ERLIGGARIC HMELSSAFVI YDDVDGKKSS QQRRRMMGAA EGNHSEDED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.