Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73448 | Canola | cytosol | 87.86 | 89.2 |
| CDX67608 | Canola | cytosol | 87.86 | 89.2 |
| Bra007098.1-P | Field mustard | cytosol | 87.86 | 89.2 |
| CDX78263 | Canola | cytosol | 87.72 | 89.06 |
| Bra014786.1-P | Field mustard | cytosol | 87.99 | 88.97 |
| CDY07523 | Canola | cytosol | 87.59 | 88.92 |
| CDY02892 | Canola | cytosol | 87.59 | 88.55 |
| CDY64695 | Canola | cytosol, golgi, nucleus | 38.2 | 88.05 |
| AT2G28320.1 | Thale cress | cytosol | 63.57 | 63.23 |
| Solyc04g025280.2.1 | Tomato | cytosol | 49.52 | 62.16 |
| Bra003193.1-P | Field mustard | cytosol | 75.44 | 56.37 |
| AT5G25010.1 | Thale cress | cytosol | 11.87 | 30.42 |
| AT5G10750.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 12.41 | 30.13 |
| AT5G45560.1 | Thale cress | mitochondrion | 29.47 | 30.04 |
| AT4G19040.2 | Thale cress | mitochondrion | 29.6 | 30.01 |
| AT5G24990.1 | Thale cress | cytosol | 10.78 | 26.87 |
| AT5G25020.1 | Thale cress | cytosol | 9.55 | 26.02 |
| AT1G06050.1 | Thale cress | cytosol | 11.05 | 25.88 |
| AT5G35180.4 | Thale cress | cytosol | 24.15 | 21.82 |
Protein Annotations
| Gene3D:2.30.29.30 | Gene3D:3.30.530.20 | MapMan:35.1 | EntrezGene:824645 | ProteinID:AEE79289.1 | ProteinID:AEE79290.1 |
| EMBL:AK317320 | ArrayExpress:AT3G54800 | EnsemblPlantsGene:AT3G54800 | RefSeq:AT3G54800 | TAIR:AT3G54800 | RefSeq:AT3G54800-TAIR-G |
| EnsemblPlants:AT3G54800.1 | TAIR:AT3G54800.1 | Unigene:At.35078 | UniProt:B9DGX7 | InterPro:EDR2_C | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008289 | InterPro:IPR001849 | InterPro:IPR002913 | InterPro:IPR011993 | InterPro:IPR023393 |
| RefSeq:NP_001030862.1 | RefSeq:NP_191040.2 | PFAM:PF00169 | PFAM:PF01852 | PFAM:PF07059 | InterPro:PH-like_dom_sf |
| InterPro:PH_domain | PO:PO:0000084 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50003 | PFscan:PS50848 | PANTHER:PTHR12136 | PANTHER:PTHR12136:SF86 | SMART:SM00233 |
| SMART:SM00234 | SUPFAM:SSF50729 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI000019700E |
| SEG:seg | : | : | : | : | : |
Description
AT3G54800 protein [Source:UniProtKB/TrEMBL;Acc:B9DGX7]
Coordinates
chr3:+:20286070..20290268
Molecular Weight (calculated)
83286.1 Da
IEP (calculated)
7.268
GRAVY (calculated)
-0.420
Length
733 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVSQTDGRM EGWLYTIRHN RFGLQFSRKR YFVLHENNLT SFKSVPSDHN EEPERRASLD CCIRVTDNGR ESFHRKILFI FTLYNTSNHL DQLKLGASSP
101: EEAAKWIRSL QDASQKGFPI PDCEFFVSHA EKGLVKLDVS KRNRRKNSVD WTNYSSTNYS STSLNVETNV APDVIAPSPW KIFGCQNGLR LFKEAKDWDS
201: RGRHWDDHPA IMAVGVIDGT SEDIFNTLMS LGPLRSEWDF CFYKGNVVEH LDGHTDIIHL QLYSDWLPWG MNRRDLLLRR YWRREDDGTY VILCHSVYHK
301: NCPPKKGYVR ACVKSGGYVV TPANNGKQSL VKHMVAIDWR SWNLYMRPSS ARSITIRVVE RVAALREMFK AKQGHGFTEF VSGEFLDTKP CLSKINTMPL
401: KTEAKEVDLE TMHAEEMDKP TSARNSLMDL NDASDEFFDV PEPNESTEFD SFIDSSPYSQ GHQLKIPTPA GIVKKLQDLA INKKGYMDLQ EVGLEENNTF
501: FYGATLQKDP SLTLPCSWST ADPSTFLIRG NNYLKNQQKV KAKGTLMQMI GADWISSDKR EDDLGGRIGG LVQEYAAKGS PEFFFIVNIQ VPGSAMYSLA
601: LYYMLKTPLE EHPLLESFVN GDDAYRNSRF KLIPHISKGS WIVKQSVGKK ACLVGQVLEV CYTRGKNYLE LDIDVGSSTV ARGVTNLVLG YLNNLVIEMA
701: FLIQANTVEE LPELLLGTCR LNYLDVSKSV KER
101: EEAAKWIRSL QDASQKGFPI PDCEFFVSHA EKGLVKLDVS KRNRRKNSVD WTNYSSTNYS STSLNVETNV APDVIAPSPW KIFGCQNGLR LFKEAKDWDS
201: RGRHWDDHPA IMAVGVIDGT SEDIFNTLMS LGPLRSEWDF CFYKGNVVEH LDGHTDIIHL QLYSDWLPWG MNRRDLLLRR YWRREDDGTY VILCHSVYHK
301: NCPPKKGYVR ACVKSGGYVV TPANNGKQSL VKHMVAIDWR SWNLYMRPSS ARSITIRVVE RVAALREMFK AKQGHGFTEF VSGEFLDTKP CLSKINTMPL
401: KTEAKEVDLE TMHAEEMDKP TSARNSLMDL NDASDEFFDV PEPNESTEFD SFIDSSPYSQ GHQLKIPTPA GIVKKLQDLA INKKGYMDLQ EVGLEENNTF
501: FYGATLQKDP SLTLPCSWST ADPSTFLIRG NNYLKNQQKV KAKGTLMQMI GADWISSDKR EDDLGGRIGG LVQEYAAKGS PEFFFIVNIQ VPGSAMYSLA
601: LYYMLKTPLE EHPLLESFVN GDDAYRNSRF KLIPHISKGS WIVKQSVGKK ACLVGQVLEV CYTRGKNYLE LDIDVGSSTV ARGVTNLVLG YLNNLVIEMA
701: FLIQANTVEE LPELLLGTCR LNYLDVSKSV KER
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.