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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX71361 Canola cytosol 91.18 91.68
Bra011959.1-P Field mustard cytosol 91.04 91.54
CDY04553 Canola cytosol 90.77 91.52
Os10t0479800-01 Rice cytosol 13.98 85.83
VIT_06s0004g02720.t01 Wine grape cytosol 72.86 73.16
Solyc11g069530.1.1 Tomato cytosol 71.1 71.78
GSMUA_Achr4P18250_001 Banana mitochondrion 30.26 71.47
KRH22877 Soybean plastid 70.01 69.92
KRH26439 Soybean cytosol, extracellular, nucleus, plastid 69.61 69.7
PGSC0003DMT400062486 Potato nucleus 68.25 68.72
Solyc06g075130.2.1 Tomato nucleus 65.81 68.31
GSMUA_Achr1P08990_001 Banana nucleus 61.6 65.14
TraesCS1D01G155000.1 Wheat nucleus 65.67 63.77
TraesCS1B01G173600.1 Wheat nucleus 65.54 63.64
AT3G54800.1 Thale cress cytosol 63.23 63.57
TraesCS1A01G156500.1 Wheat nucleus 65.4 63.5
EER91476 Sorghum nucleus 65.4 63.01
GSMUA_Achr5P14640_001 Banana cytosol, extracellular, mitochondrion, nucleus 62.28 62.36
GSMUA_Achr11P... Banana cytosol 47.08 61.96
Zm00001d032685_P001 Maize nucleus 62.96 60.5
HORVU1Hr1G041740.29 Barley extracellular, nucleus, plasma membrane 63.64 60.44
GSMUA_Achr2P00220_001 Banana nucleus 54.68 59.09
AT5G10750.1 Thale cress cytosol, mitochondrion, nucleus, plastid 13.84 33.77
AT5G45560.1 Thale cress mitochondrion 31.89 32.68
AT4G19040.2 Thale cress mitochondrion 32.02 32.64
AT5G25010.1 Thale cress cytosol 11.8 30.42
AT1G06050.1 Thale cress cytosol 12.89 30.35
AT5G24990.1 Thale cress cytosol 11.4 28.57
AT5G25020.1 Thale cress cytosol 10.31 28.25
AT5G35180.4 Thale cress cytosol 25.64 23.3
Protein Annotations
Gene3D:2.30.29.30Gene3D:3.30.530.20MapMan:35.1EntrezGene:817379UniProt:A0A178VNB6ProteinID:AEC08107.1
ArrayExpress:AT2G28320EnsemblPlantsGene:AT2G28320RefSeq:AT2G28320TAIR:AT2G28320RefSeq:AT2G28320-TAIR-GEnsemblPlants:AT2G28320.1
TAIR:AT2G28320.1Unigene:At.46281InterPro:EDR2_CUniProt:F4IHT0GO:GO:0003674GO:GO:0005488
GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0008289GO:GO:0016020InterPro:IPR001849
InterPro:IPR002913InterPro:IPR011993InterPro:IPR023393RefSeq:NP_180399.2ProteinID:OAP07326.1PFAM:PF00169
PFAM:PF01852PFAM:PF07059InterPro:PH-like_dom_sfInterPro:PH_domainPO:PO:0000013PO:PO:0000037
PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281PFscan:PS50003PFscan:PS50848PANTHER:PTHR12136PANTHER:PTHR12136:SF86
SMART:SM00233SMART:SM00234SUPFAM:SSF50729SUPFAM:SSF55961InterPro:START-like_dom_sfInterPro:START_lipid-bd_dom
UniParc:UPI000034EDB7SEG:seg::::
Description
Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IHT0]
Coordinates
chr2:+:12094621..12099644
Molecular Weight (calculated)
83252.6 Da
IEP (calculated)
7.816
GRAVY (calculated)
-0.429
Length
737 amino acids
Sequence
(BLAST)
001: MAFGSENESE TKMEGWLYII RSNRFGLHFS RKRYFVLGDH LLKSFKSISD SKTKNAGRSA VIDSCIRVTD NGRENVHRKA FFIFTLYNTS NHNDQLKLGA
101: SSPEDAARWI NLIKEAALKG APFPGDVFNC SRSRWDSLRL SSSVRDHHSN SIDWTLRSSA RVDPVTTDVV APSPWTIFGC QNGLRLFKEA KERDSLGRWD
201: DHPAIMAVGV VDGTSETIFQ TLLSLGPSRS EWDFCFYQGS VVEHLDGHTD IIHKQLYSDW LPWGMKRRDF SLRRYWRRED DGTYVILYHS VFHKKCPPQK
301: GYVRACLKSG GYVISPIDNG KQSVVKHMLA VDWKSWRSYV KPSLARSITV KMLGRISALR ELFRAKHGSF PPNLSSGELS RSARLTQNED GVFGDSSLRE
401: NEMFKDTANE ERDKFPSERS SLVDLDEFFD VPEPSDNDNL DDSWTSDFDL DTCCQESRQP KLNSATSLVK KLHDLAVQKR GYVDLHERAK EESSPHATCN
501: PPCCYGTTLP TDPSCDLPCS WTTTDPSTFL IRGKTYLDDQ KKVKAKGTLM EMVAADWLKS DKREDDLGSR PGGIVQKYAA KGGPEFFFIV NIQVPGSTTY
601: SLVLYYMMST PIEEHPLLVS FVNGDDAYRN SRFKLIPYIS KGSWIVKQSV GKKACLIGQA LEINYFRGKN YIELGVDIGS STVARGVVSL VLGYLNKLVI
701: EMAFLIQANT EEELPEYLLG TCRFNHLDAS KAISIIP
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.