Factsheet for Solyc06g075130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062486	Potato	nucleus	94.37	91.53
Os10t0479800-01	Rice	cytosol	13.94	82.5
Solyc11g069530.1.1	Tomato	cytosol	80.28	78.08
VIT_06s0004g02720.t01	Wine grape	cytosol	75.92	73.43
GSMUA_Achr4P18250_001	Banana	mitochondrion	32.11	73.08
KRH22877	Soybean	plastid	70.28	67.62
KRH26439	Soybean	cytosol, extracellular, nucleus, plastid	70.0	67.53
CDY04553	Canola	cytosol	69.3	67.31
Bra011959.1-P	Field mustard	cytosol	69.15	66.98
CDX71361	Canola	cytosol	69.15	66.98
GSMUA_Achr11P...	Banana	cytosol	52.11	66.07
AT2G28320.1	Thale cress	cytosol	68.31	65.81
GSMUA_Achr1P08990_001	Banana	nucleus	62.96	64.13
TraesCS1D01G155000.1	Wheat	nucleus	68.31	63.9
TraesCS1A01G156500.1	Wheat	nucleus	68.03	63.64
TraesCS1B01G173600.1	Wheat	nucleus	67.89	63.5
EER91476	Sorghum	nucleus	67.32	62.48
GSMUA_Achr5P14640_001	Banana	cytosol, extracellular, mitochondrion, nucleus	64.37	62.09
HORVU1Hr1G041740.29	Barley	extracellular, nucleus, plasma membrane	67.75	61.98
Solyc04g025280.2.1	Tomato	cytosol	50.14	60.96
GSMUA_Achr2P00220_001	Banana	nucleus	57.89	60.26
Zm00001d032685_P001	Maize	nucleus	65.07	60.23
Solyc08g006590.1.1	Tomato	cytosol	12.82	32.73
Solyc08g005410.2.1	Tomato	cytosol	31.97	32.02
Solyc08g068880.1.1	Tomato	mitochondrion	13.66	30.79
Solyc12g096050.1.1	Tomato	mitochondrion	30.85	30.25
Solyc07g005000.2.1	Tomato	cytosol	28.59	26.96
Solyc06g053360.2.1	Tomato	cytosol	10.14	23.61

Protein Annotations

Gene3D:3.30.530.20	MapMan:35.1	InterPro:EDR2_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289
InterPro:IPR001849	InterPro:IPR002913	InterPro:IPR023393	UniProt:K4C9M9	PFAM:PF01852	PFAM:PF07059
InterPro:PH_domain	PFscan:PS50003	PFscan:PS50848	PANTHER:PTHR12136	PANTHER:PTHR12136:SF86	SMART:SM00234
SUPFAM:SSF50729	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:Solyc06g075130.2	EnsemblPlants:Solyc06g075130.2.1
UniParc:UPI0002766988	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:46617099..46624440

Molecular Weight (calculated)

80028.5 Da

IEP (calculated)

7.622

GRAVY (calculated)

-0.344

Length

710 amino acids

Sequence
(BLAST)

001: MLHPIVCANV LGIVTSAHMY IVDACSLEAR DPVRSAVIDS CIRVTDNGRE SIQRKVVFIF TLYNASNHND QLKLGANSPE EAARWIQALQ EAALKADMNK
101: RTTVDGPRRD SQSLRLNCSN KSHHLNSSDW TYCSSSVADA TTSDVVAPSS WTIFGCQNGL RLFKEAKDRK SHGKWNDHPA IMAVGVVDGT SEAIFQTLMS
201: LGPSRSEWDF CHYKGSVIEH LDGHTDIVHK LLRRDWLPWS MRKRDLLLQR YWRREDDGTY VILYHSVFHQ KCPSQKGYVR ACLKSGGYVI SPVNQKKQSV
301: VKHMLAIDWR FWKSNLQTSS ARYITIHMLG RLAALRELFI AKLGDCSSSH FLEEHVRDKR LHQIEEVKVE IQTRVENGKN MADMEEEVAK SPSEHASLMG
401: LNDASDEFFD VSEPLDYDQS EDGWPSDFGP EMYSQDTRHA KLSSAAGFVK KLHDLAVHKR GYVDLHEKAK EDALLCHYGS TLPKDPTFNL PCSWAQTDPS
501: TFLIRGETYL EDRKKIKAKG TLMQMVAADW LKSDKREDDL GGRPGSIVQK YAAKGGPEFF FIVNIQVPGS TTYSLALYYM MDTPIENAPL LESFVKGDDA
601: FRNSRFKLIP YISKGPWIVK QSVGKKACLV GPALEINYFR GKNYLELDIH VGSSTVARGV VSLVVGYLNN LVIEMAFLVQ ANTPEELPEY LLATCRLNHL
701: DISKAVLVKP

Best Arabidopsis Sequence Match ( AT2G28320.1 )
(BLAST)

001: MAFGSENESE TKMEGWLYII RSNRFGLHFS RKRYFVLGDH LLKSFKSISD SKTKNAGRSA VIDSCIRVTD NGRENVHRKA FFIFTLYNTS NHNDQLKLGA
101: SSPEDAARWI NLIKEAALKG APFPGDVFNC SRSRWDSLRL SSSVRDHHSN SIDWTLRSSA RVDPVTTDVV APSPWTIFGC QNGLRLFKEA KERDSLGRWD
201: DHPAIMAVGV VDGTSETIFQ TLLSLGPSRS EWDFCFYQGS VVEHLDGHTD IIHKQLYSDW LPWGMKRRDF SLRRYWRRED DGTYVILYHS VFHKKCPPQK
301: GYVRACLKSG GYVISPIDNG KQSVVKHMLA VDWKSWRSYV KPSLARSITV KMLGRISALR ELFRAKHGSF PPNLSSGELS RSARLTQNED GVFGDSSLRE
401: NEMFKDTANE ERDKFPSERS SLVDLDEFFD VPEPSDNDNL DDSWTSDFDL DTCCQESRQP KLNSATSLVK KLHDLAVQKR GYVDLHERAK EESSPHATCN
501: PPCCYGTTLP TDPSCDLPCS WTTTDPSTFL IRGKTYLDDQ KKVKAKGTLM EMVAADWLKS DKREDDLGSR PGGIVQKYAA KGGPEFFFIV NIQVPGSTTY
601: SLVLYYMMST PIEEHPLLVS FVNGDDAYRN SRFKLIPYIS KGSWIVKQSV GKKACLIGQA LEINYFRGKN YIELGVDIGS STVARGVVSL VLGYLNKLVI
701: EMAFLIQANT EEELPEYLLG TCRFNHLDAS KAISIIP

Arabidopsis Description

Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IHT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.