Factsheet for Solyc08g068880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038272	Potato	mitochondrion	96.51	96.51
Solyc08g006590.1.1	Tomato	cytosol	63.81	72.3
VIT_04s0008g07260.t01	Wine grape	cytosol, nucleus, plastid	64.13	66.23
KRH52302	Soybean	cytosol	59.37	64.71
AT5G10750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	60.0	62.58
CDX70368	Canola	cytosol, mitochondrion, nucleus, plastid	59.68	62.05
Bra006077.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	59.68	62.05
CDX78399	Canola	nucleus, plastid	59.37	61.72
KRH61636	Soybean	cytosol	57.14	60.61
KRH15692	Soybean	cytosol	54.6	57.72
GSMUA_Achr5P21900_001	Banana	cytosol	60.63	57.7
GSMUA_Achr7P15920_001	Banana	cytosol	58.41	56.1
GSMUA_Achr5P04860_001	Banana	plastid	49.84	56.07
TraesCS7A01G424300.1	Wheat	cytosol	56.51	55.62
Zm00001d014641_P001	Maize	cytosol, extracellular, nucleus	57.14	55.38
TraesCS7B01G325500.1	Wheat	cytosol	56.51	55.28
TraesCS7D01G417100.2	Wheat	cytosol, mitochondrion, nucleus	55.87	54.83
OQU76985	Sorghum	cytosol, extracellular, nucleus	55.87	54.15
Zm00001d036506_P001	Maize	extracellular, nucleus, plastid	56.19	54.13
KRH05337	Soybean	cytosol	43.81	50.92
Bra036529.1-P	Field mustard	cytosol	45.08	49.82
HORVU7Hr1G098100.1	Barley	plastid	55.24	49.15
AT5G25020.1	Thale cress	cytosol	40.95	47.96
AT5G24990.1	Thale cress	cytosol	44.44	47.62
CDX80479	Canola	cytoskeleton, cytosol, nucleus	43.81	47.1
AT5G25010.1	Thale cress	cytosol	42.54	46.85
Bra009807.1-P	Field mustard	cytosol	43.17	46.42
Bra009809.1-P	Field mustard	cytosol	41.27	46.1
CDX88150	Canola	cytosol	40.95	45.74
CDX88148	Canola	cytosol	38.1	45.45
CDX80480	Canola	cytosol	29.21	44.88
CDY05382	Canola	cytosol	36.83	43.12
Solyc06g053360.2.1	Tomato	cytosol	33.02	34.1
Solyc04g025280.2.1	Tomato	cytosol	30.16	16.27
Solyc08g005410.2.1	Tomato	cytosol	36.51	16.22
Solyc12g096050.1.1	Tomato	mitochondrion	34.6	15.06
Solyc06g075130.2.1	Tomato	nucleus	30.79	13.66
Solyc11g069530.1.1	Tomato	cytosol	30.79	13.29
Solyc07g005000.2.1	Tomato	cytosol	31.75	13.28

Protein Annotations

EnsemblPlants:Solyc08g068880.1.1	EnsemblPlantsGene:Solyc08g068880.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	InterPro:EDR2_C
PANTHER:PTHR12136	PANTHER:PTHR12136:SF38	PFAM:PF07059	SEG:seg	UniParc:UPI000276ACB9	UniProt:K4CMB0
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:57968910..57969857

Molecular Weight (calculated)

34356.6 Da

IEP (calculated)

8.223

GRAVY (calculated)

-0.435

Length

315 amino acids

Sequence
(BLAST)

001: MCSTKQKQKQ NLHNQRSVVP TSTSASGGDG GGGGDWREES ITGGSLKHVD LDKGKNGWAS PPGDLFNLRG PHYLTKKAKV PSGAWLLQPA GVDWLRSNSK
101: LDHVLARHDN RVMNALKKSH SEGKSLKTFI VAVNLQVPGR DQHSAVFYFA TNDDEPLEPG SLLYRFVNGD DAYRNSRFKI VNRIVKGPWI VKAAVGNYSA
201: CILGKALNCY YHRGPNYLEI DVDIGSSAIA SAILHLALGS VTSVTIDMGF LVESQTEEEL PEKLFGAVRI CQMEMSSATF IDTTSSRKVL PTANLHNPCN
301: SSKVQAEENG ENKDD

Best Arabidopsis Sequence Match ( AT5G10750.1 )
(BLAST)

001: MSPSKQRHRS STGENKSKPV RSASSSAIPE WITESTNGGS LRRVDPDTGT DGWASPPGDV FSLRSDSYLS KKQKTPAGDY LLSPAGMDWL KSSTKLENAL
101: ARPDNRVAHA LRKAQSRGQS LKSFIFAVNL QIPGKDHHSA VFYFATEEPI PSGSLLHRFI NGDDAFRNQR FKIVNRIVKG PWVVKAAVGN YSACLLGKAL
201: TCNYHRGPNY FEIDVDISSS AIATAILRLA LGYVTSVTID MGFLAEAQTE EELPERLIGA VRVCQMEMSS AFVVDAPPPQ QLPSQPCRTL SSAKVNHDED
301: ED

Arabidopsis Description

At5g10750 [Source:UniProtKB/TrEMBL;Acc:Q9LEW4]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.