Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G25020.1 | Thale cress | cytosol | 75.87 | 80.67 |
| AT5G24990.1 | Thale cress | cytosol | 82.52 | 80.27 |
| Bra036529.1-P | Field mustard | cytosol | 65.03 | 65.26 |
| CDY05382 | Canola | cytosol | 60.14 | 63.94 |
| CDX80479 | Canola | cytoskeleton, cytosol, nucleus | 64.69 | 63.14 |
| Bra009807.1-P | Field mustard | cytosol | 62.94 | 61.43 |
| CDX88148 | Canola | cytosol | 56.29 | 60.98 |
| Bra009809.1-P | Field mustard | cytosol | 58.04 | 58.87 |
| CDX80480 | Canola | cytosol | 41.96 | 58.54 |
| CDX88150 | Canola | cytosol | 57.69 | 58.51 |
| AT5G10750.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 59.44 | 56.29 |
| KRH52302 | Soybean | cytosol | 52.45 | 51.9 |
| KRH15692 | Soybean | cytosol | 53.15 | 51.01 |
| VIT_04s0008g07260.t01 | Wine grape | cytosol, nucleus, plastid | 54.2 | 50.82 |
| KRH61636 | Soybean | cytosol | 52.1 | 50.17 |
| PGSC0003DMT400067616 | Potato | cytosol | 46.5 | 45.86 |
| KRH05337 | Soybean | cytosol | 41.96 | 44.28 |
| GSMUA_Achr5P21900_001 | Banana | cytosol | 49.65 | 42.9 |
| Solyc08g006590.1.1 | Tomato | cytosol | 41.61 | 42.81 |
| Solyc08g068880.1.1 | Tomato | mitochondrion | 46.85 | 42.54 |
| PGSC0003DMT400038272 | Potato | mitochondrion | 46.85 | 42.54 |
| GSMUA_Achr5P04860_001 | Banana | plastid | 41.26 | 42.14 |
| GSMUA_Achr7P15920_001 | Banana | cytosol | 48.25 | 42.07 |
| TraesCS7A01G424300.1 | Wheat | cytosol | 43.01 | 38.44 |
| TraesCS7B01G325500.1 | Wheat | cytosol | 43.01 | 38.2 |
| TraesCS7D01G417100.2 | Wheat | cytosol, mitochondrion, nucleus | 42.66 | 38.01 |
| Zm00001d014641_P001 | Maize | cytosol, extracellular, nucleus | 43.01 | 37.85 |
| OQU76985 | Sorghum | cytosol, extracellular, nucleus | 41.96 | 36.92 |
| Zm00001d036506_P001 | Maize | extracellular, nucleus, plastid | 40.21 | 35.17 |
| HORVU7Hr1G098100.1 | Barley | plastid | 42.31 | 34.18 |
| AT1G06050.1 | Thale cress | cytosol | 33.22 | 30.35 |
| AT5G45560.1 | Thale cress | mitochondrion | 35.31 | 14.05 |
| AT4G19040.2 | Thale cress | mitochondrion | 34.97 | 13.83 |
| AT3G54800.1 | Thale cress | cytosol | 30.42 | 11.87 |
| AT2G28320.1 | Thale cress | cytosol | 30.42 | 11.8 |
| AT5G35180.4 | Thale cress | cytosol | 32.52 | 11.47 |
Protein Annotations
| ArrayExpress:AT5G25010 | EnsemblPlants:AT5G25010.1 | EnsemblPlantsGene:AT5G25010 | EntrezGene:832571 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008289 | InterPro:EDR2_C | PANTHER:PTHR12136 | PANTHER:PTHR12136:SF88 | PFAM:PF07059 |
| PO:PO:0000293 | ProteinID:AED93388.1 | RefSeq:AT5G25010 | RefSeq:AT5G25010-TAIR-G | RefSeq:NP_197883.1 | SEG:seg |
| TAIR:AT5G25010 | TAIR:AT5G25010.1 | UniParc:UPI000016257E | UniProt:Q3E7D9 | MapMan:35.1 | : |
Description
Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT5G25010]
Coordinates
chr5:+:8615778..8617209
Molecular Weight (calculated)
31772.3 Da
IEP (calculated)
5.374
GRAVY (calculated)
-0.295
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQTKTTDDN NNNSKPDETE STTTVPEWIT ETINGGSFHH VDLETGTNGW ASPPGNVFSL RSNNYFTTKQ KSPGGDYLLS LIAVDWLKST TKKLDHILCR
101: PDNRVIHALE TSQSRSFIFA VNFQIPGKEH YHLVLYFATE KPIPSDSILH KFINIDDDSF RNERFKVVTN VVKGPWVVKA TAGKLGAFLA GKVVKCSYYR
201: GANYFEVDVD FSISAIYSAL VRLTLGYVTN LVADVGFVVE AQTEEELPER LIGGGRVCYM ELSSAFLVDD GKKMGAAEGN HSEDEI
101: PDNRVIHALE TSQSRSFIFA VNFQIPGKEH YHLVLYFATE KPIPSDSILH KFINIDDDSF RNERFKVVTN VVKGPWVVKA TAGKLGAFLA GKVVKCSYYR
201: GANYFEVDVD FSISAIYSAL VRLTLGYVTN LVADVGFVVE AQTEEELPER LIGGGRVCYM ELSSAFLVDD GKKMGAAEGN HSEDEI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.