Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015470.1-P | Field mustard | cytosol | 85.3 | 86.69 |
| KRH24608 | Soybean | cytosol | 61.98 | 62.58 |
| TraesCS7D01G299000.1 | Wheat | cytosol | 61.34 | 62.14 |
| TraesCS7B01G203900.1 | Wheat | cytosol | 61.34 | 62.14 |
| KRH23216 | Soybean | cytosol | 43.77 | 61.99 |
| TraesCS7A01G303600.1 | Wheat | cytosol | 61.02 | 61.81 |
| PGSC0003DMT400042135 | Potato | cytosol | 62.3 | 61.71 |
| HORVU7Hr1G072050.4 | Barley | cytosol | 60.7 | 60.13 |
| TraesCS2A01G242800.1 | Wheat | cytosol | 58.47 | 59.22 |
| KRH10121 | Soybean | endoplasmic reticulum, golgi | 63.26 | 56.41 |
| VIT_05s0102g00770.t01 | Wine grape | cytosol | 64.54 | 56.11 |
| Solyc06g053360.2.1 | Tomato | cytosol | 54.31 | 55.74 |
| KRH29613 | Soybean | cytosol | 52.08 | 55.07 |
| Os08t0152600-01 | Rice | cytosol | 59.42 | 51.52 |
| KXG24431 | Sorghum | plastid | 62.94 | 49.37 |
| GSMUA_Achr1P11490_001 | Banana | plastid | 60.7 | 47.62 |
| CDY10168 | Canola | nucleus | 82.43 | 45.74 |
| Zm00001d024605_P001 | Maize | mitochondrion | 61.34 | 44.24 |
| AT5G10750.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 38.34 | 39.74 |
| AT5G25010.1 | Thale cress | cytosol | 30.35 | 33.22 |
| AT5G25020.1 | Thale cress | cytosol | 28.11 | 32.71 |
| AT5G24990.1 | Thale cress | cytosol | 30.67 | 32.65 |
| AT5G45560.1 | Thale cress | mitochondrion | 30.99 | 13.49 |
| AT4G19040.2 | Thale cress | mitochondrion | 30.35 | 13.14 |
| AT2G28320.1 | Thale cress | cytosol | 30.35 | 12.89 |
| AT5G35180.4 | Thale cress | cytosol | 32.27 | 12.45 |
| AT3G54800.1 | Thale cress | cytosol | 25.88 | 11.05 |
Protein Annotations
| MapMan:35.1 | EntrezGene:837114 | UniProt:A0A178WJ78 | ProteinID:AEE27934.1 | ArrayExpress:AT1G06050 | EnsemblPlantsGene:AT1G06050 |
| RefSeq:AT1G06050 | TAIR:AT1G06050 | RefSeq:AT1G06050-TAIR-G | EnsemblPlants:AT1G06050.1 | TAIR:AT1G06050.1 | Unigene:At.73044 |
| InterPro:EDR2_C | UniProt:F4IBY8 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008289 |
| RefSeq:NP_563757.1 | ProteinID:OAP18429.1 | PFAM:PF07059 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR12136 | PANTHER:PTHR12136:SF61 | UniParc:UPI0000162C82 | SEG:seg | : |
Description
Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT1G06050]
Coordinates
chr1:-:1830471..1832555
Molecular Weight (calculated)
34852.4 Da
IEP (calculated)
5.271
GRAVY (calculated)
-0.330
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSVGEETE PEWIKRVKLE GAVPCLKPDD NCKNGWTTPS PDTFMVRGPK YFSDKVKIPA GDFLLKPLGF DWIKGPKKLS EILSYPSSRI RKVIDEEFQK
101: DGTKPFVWAF NLQLPHKDNY SAVAYFVTTE PILEGSLMDR FLKGDDGFKK SRLKLIANIV KGPWIVRKAV GEQAICVIGR ALSCKYVSGE NFVEIDVDIG
201: SSMVASAIVH LAFGYVTTLT VDLAFLIESQ TEAELPEKLL GAVRFSELQT ESATSIELSS STSNDQWDQT TSERSSWWKS IGNGFSNLLN QDTANMNNTS
301: HGDIQKDEHV QKQ
101: DGTKPFVWAF NLQLPHKDNY SAVAYFVTTE PILEGSLMDR FLKGDDGFKK SRLKLIANIV KGPWIVRKAV GEQAICVIGR ALSCKYVSGE NFVEIDVDIG
201: SSMVASAIVH LAFGYVTTLT VDLAFLIESQ TEAELPEKLL GAVRFSELQT ESATSIELSS STSNDQWDQT TSERSSWWKS IGNGFSNLLN QDTANMNNTS
301: HGDIQKDEHV QKQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.