Factsheet for PGSC0003DMT400042135

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053360.2.1	Tomato	cytosol	82.91	85.9
TraesCS7B01G203900.1	Wheat	cytosol	62.03	63.43
TraesCS7D01G299000.1	Wheat	cytosol	62.03	63.43
TraesCS7A01G303600.1	Wheat	cytosol	61.71	63.11
AT1G06050.1	Thale cress	cytosol	61.71	62.3
Bra015470.1-P	Field mustard	cytosol	60.44	62.01
HORVU7Hr1G072050.4	Barley	cytosol	61.71	61.71
TraesCS2A01G242800.1	Wheat	cytosol	59.18	60.52
KRH24608	Soybean	cytosol	59.18	60.32
VIT_05s0102g00770.t01	Wine grape	cytosol	68.35	60.0
KRH23216	Soybean	cytosol	38.92	55.66
KRH10121	Soybean	endoplasmic reticulum, golgi	59.81	53.85
Os08t0152600-01	Rice	cytosol	60.13	52.63
KRH29613	Soybean	cytosol	45.57	48.65
GSMUA_Achr1P11490_001	Banana	plastid	59.81	47.37
KXG24431	Sorghum	plastid	59.18	46.87
Zm00001d024605_P001	Maize	mitochondrion	59.49	43.32
PGSC0003DMT400067616	Potato	cytosol	35.76	38.97
PGSC0003DMT400038272	Potato	mitochondrion	37.34	37.46
CDY10168	Canola	nucleus	61.08	34.22
PGSC0003DMT400047520	Potato	cytosol	28.16	12.46
PGSC0003DMT400062486	Potato	nucleus	24.68	10.66

Protein Annotations

EnsemblPlants:PGSC0003DMT400042135	EnsemblPlantsGene:PGSC0003DMG400016339	InterPro:EDR2_C	PANTHER:PTHR12136	PANTHER:PTHR12136:SF61	PFAM:PF07059
PGSC:PGSC0003DMG400016339	UniParc:UPI000294B687	UniProt:M1BCK0	MapMan:35.1	:	:

Description

Lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016339]

Coordinates

chr6:+:39105067..39106017

Molecular Weight (calculated)

34777.6 Da

IEP (calculated)

4.960

GRAVY (calculated)

-0.146

Length

316 amino acids

Sequence
(BLAST)

001: MANLDGDNEP EWIKRVKSEG AIPLLDPDDC SNGWASPPGN SFMVRGPEYF STKVKVPGGE FLLKPLGFDW IKGPKKISDI LNNPKHRIRI ALQDETPTGC
101: KPFIWAFNLQ VPSKENFSAV AYFVGLEPVP EGSLMEQFLK GDDAFRTKRL KLIANIVKGP WIVRKAVGEQ AICVIGRALT CKYCIADDFI EVDVDIGSSV
201: IANAIVHLAY NYLSTLAVDL AFLIESQTQS ELPERILGAV RFSELQTTSA TLVEMPSNEN MGELLPSFPS RLWKSFGHSF SHLVQADTQD GSSSSIPSLV
301: KGDVDNGLSE EGTKKW

Best Arabidopsis Sequence Match ( AT1G06050.1 )
(BLAST)

001: MAGSVGEETE PEWIKRVKLE GAVPCLKPDD NCKNGWTTPS PDTFMVRGPK YFSDKVKIPA GDFLLKPLGF DWIKGPKKLS EILSYPSSRI RKVIDEEFQK
101: DGTKPFVWAF NLQLPHKDNY SAVAYFVTTE PILEGSLMDR FLKGDDGFKK SRLKLIANIV KGPWIVRKAV GEQAICVIGR ALSCKYVSGE NFVEIDVDIG
201: SSMVASAIVH LAFGYVTTLT VDLAFLIESQ TEAELPEKLL GAVRFSELQT ESATSIELSS STSNDQWDQT TSERSSWWKS IGNGFSNLLN QDTANMNNTS
301: HGDIQKDEHV QKQ

Arabidopsis Description

Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT1G06050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.