Factsheet for PGSC0003DMT400038272

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g068880.1.1	Tomato	mitochondrion	96.51	96.51
PGSC0003DMT400067616	Potato	cytosol	73.65	80.0
VIT_04s0008g07260.t01	Wine grape	cytosol, nucleus, plastid	64.44	66.56
KRH52302	Soybean	cytosol	58.73	64.01
AT5G10750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	59.37	61.92
Bra006077.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	59.05	61.39
CDX70368	Canola	cytosol, mitochondrion, nucleus, plastid	59.05	61.39
CDX78399	Canola	nucleus, plastid	58.73	61.06
KRH61636	Soybean	cytosol	56.83	60.27
GSMUA_Achr5P21900_001	Banana	cytosol	60.63	57.7
KRH15692	Soybean	cytosol	53.97	57.05
TraesCS7A01G424300.1	Wheat	cytosol	56.83	55.94
GSMUA_Achr7P15920_001	Banana	cytosol	58.1	55.79
TraesCS7B01G325500.1	Wheat	cytosol	56.83	55.59
GSMUA_Achr5P04860_001	Banana	plastid	49.21	55.36
TraesCS7D01G417100.2	Wheat	cytosol, mitochondrion, nucleus	56.19	55.14
Zm00001d014641_P001	Maize	cytosol, extracellular, nucleus	56.83	55.08
OQU76985	Sorghum	cytosol, extracellular, nucleus	55.56	53.85
Zm00001d036506_P001	Maize	extracellular, nucleus, plastid	55.87	53.82
KRH05337	Soybean	cytosol	43.17	50.18
Bra036529.1-P	Field mustard	cytosol	45.4	50.18
HORVU7Hr1G098100.1	Barley	plastid	55.56	49.44
AT5G25020.1	Thale cress	cytosol	40.95	47.96
AT5G24990.1	Thale cress	cytosol	44.44	47.62
CDX80479	Canola	cytoskeleton, cytosol, nucleus	43.81	47.1
AT5G25010.1	Thale cress	cytosol	42.54	46.85
Bra009809.1-P	Field mustard	cytosol	41.59	46.45
Bra009807.1-P	Field mustard	cytosol	43.17	46.42
CDX88150	Canola	cytosol	41.27	46.1
CDX88148	Canola	cytosol	38.1	45.45
CDX80480	Canola	cytosol	29.52	45.37
CDY05382	Canola	cytosol	37.14	43.49
PGSC0003DMT400042135	Potato	cytosol	37.46	37.34
PGSC0003DMT400047520	Potato	cytosol	35.24	15.55
PGSC0003DMT400062486	Potato	nucleus	29.84	12.84

Protein Annotations

EnsemblPlants:PGSC0003DMT400038272	EnsemblPlantsGene:PGSC0003DMG400014765	EntrezGene:102601805	InterPro:EDR2_C	PANTHER:PTHR12136	PANTHER:PTHR12136:SF38
PFAM:PF07059	PGSC:PGSC0003DMG400014765	RefSeq:XP_006365070.1	SEG:seg	UniParc:UPI0002949E9E	UniProt:M1B6K0
MapMan:35.1	:	:	:	:	:

Description

Lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014765]

Coordinates

chr8:-:44313411..44314664

Molecular Weight (calculated)

34383.7 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.413

Length

315 amino acids

Sequence
(BLAST)

001: MCSTKQNQKQ NLHHKRSVVP TSTSAAGGEG GGGGDWREES ITGGSLKHVD LDKGKNGWAS PPGDLFNLRG PNYLTKKVKV PSGAWLLQPA GVDWLRSNSK
101: LDHVLARHDN RVMNALKKSH SEGKSMKTFI VAVNLQVPGR DQHSAVFYFA TNDDEPLEPG SLLYRFVNGD DAYRNSRFKI VNRIVKGPWI VKAAVGNYSA
201: CILGKALNCY YHRGPNYLEI DVDIGSSAIA SAILHLALGS VTSVTIDMGF LVESQTEEEL PEKLFGAVRI CQMEMSSATF IDTTSSRKVL PTANLHNPSN
301: SSRVQAEEVG ENKDD

Best Arabidopsis Sequence Match ( AT5G10750.1 )
(BLAST)

001: MSPSKQRHRS STGENKSKPV RSASSSAIPE WITESTNGGS LRRVDPDTGT DGWASPPGDV FSLRSDSYLS KKQKTPAGDY LLSPAGMDWL KSSTKLENAL
101: ARPDNRVAHA LRKAQSRGQS LKSFIFAVNL QIPGKDHHSA VFYFATEEPI PSGSLLHRFI NGDDAFRNQR FKIVNRIVKG PWVVKAAVGN YSACLLGKAL
201: TCNYHRGPNY FEIDVDISSS AIATAILRLA LGYVTSVTID MGFLAEAQTE EELPERLIGA VRVCQMEMSS AFVVDAPPPQ QLPSQPCRTL SSAKVNHDED
301: ED

Arabidopsis Description

At5g10750 [Source:UniProtKB/TrEMBL;Acc:Q9LEW4]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.