Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52302 | Soybean | cytosol | 66.56 | 70.24 |
| CDX70368 | Canola | cytosol, mitochondrion, nucleus, plastid | 69.51 | 69.97 |
| CDX78399 | Canola | nucleus, plastid | 69.18 | 69.64 |
| Bra006077.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 68.85 | 69.31 |
| AT5G10750.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 67.21 | 67.88 |
| KRH61636 | Soybean | cytosol | 65.25 | 67.0 |
| PGSC0003DMT400067616 | Potato | cytosol | 62.95 | 66.21 |
| GSMUA_Achr7P15920_001 | Banana | cytosol | 71.15 | 66.16 |
| GSMUA_Achr5P21900_001 | Banana | cytosol | 71.48 | 65.86 |
| KRH15692 | Soybean | cytosol | 64.26 | 65.77 |
| GSMUA_Achr5P04860_001 | Banana | plastid | 59.67 | 65.0 |
| PGSC0003DMT400038272 | Potato | mitochondrion | 66.56 | 64.44 |
| Solyc08g068880.1.1 | Tomato | mitochondrion | 66.23 | 64.13 |
| Solyc08g006590.1.1 | Tomato | cytosol | 54.43 | 59.71 |
| Bra036529.1-P | Field mustard | cytosol | 55.41 | 59.3 |
| KRH05337 | Soybean | cytosol | 50.82 | 57.2 |
| Zm00001d014641_P001 | Maize | cytosol, extracellular, nucleus | 59.34 | 55.69 |
| CDX80479 | Canola | cytoskeleton, cytosol, nucleus | 53.44 | 55.63 |
| TraesCS7A01G424300.1 | Wheat | cytosol | 57.7 | 55.0 |
| Bra009807.1-P | Field mustard | cytosol | 52.79 | 54.95 |
| OQU76985 | Sorghum | cytosol, extracellular, nucleus | 58.36 | 54.77 |
| TraesCS7D01G417100.2 | Wheat | cytosol, mitochondrion, nucleus | 57.38 | 54.52 |
| TraesCS7B01G325500.1 | Wheat | cytosol | 57.38 | 54.35 |
| AT5G25010.1 | Thale cress | cytosol | 50.82 | 54.2 |
| CDX88148 | Canola | cytosol | 46.89 | 54.17 |
| CDY05382 | Canola | cytosol | 47.54 | 53.9 |
| Bra009809.1-P | Field mustard | cytosol | 49.84 | 53.9 |
| CDX80480 | Canola | cytosol | 36.07 | 53.66 |
| CDX88150 | Canola | cytosol | 49.51 | 53.55 |
| AT5G25020.1 | Thale cress | cytosol | 47.21 | 53.53 |
| AT5G24990.1 | Thale cress | cytosol | 51.48 | 53.4 |
| Zm00001d036506_P001 | Maize | extracellular, nucleus, plastid | 56.72 | 52.91 |
| HORVU7Hr1G098100.1 | Barley | plastid | 56.72 | 48.87 |
| VIT_02s0033g00160.t01 | Wine grape | cytosol, extracellular | 18.36 | 40.0 |
| VIT_05s0102g00770.t01 | Wine grape | cytosol | 40.33 | 34.17 |
| VIT_15s0107g00410.t01 | Wine grape | cytosol | 36.39 | 20.0 |
| VIT_02s0033g00080.t01 | Wine grape | mitochondrion | 36.39 | 15.63 |
| VIT_02s0033g00120.t01 | Wine grape | cytosol | 32.79 | 13.62 |
| VIT_06s0004g02720.t01 | Wine grape | cytosol | 31.8 | 13.22 |
| VIT_15s0107g00440.t01 | Wine grape | cytosol | 7.21 | 6.45 |
Protein Annotations
| EntrezGene:100257058 | wikigene:100257058 | MapMan:35.1 | EMBL:AM453888 | ProteinID:CAN83078 | ProteinID:CAN83078.1 |
| ProteinID:CCB46903 | ProteinID:CCB46903.1 | InterPro:EDR2_C | UniProt:F6H3L6 | EMBL:FN595231 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008289 | EntrezGene:LOC100257058 | wikigene:LOC100257058 | PFAM:PF07059 | PANTHER:PTHR12136 |
| PANTHER:PTHR12136:SF38 | TIGR:TC58192 | UniParc:UPI0001983041 | ArrayExpress:VIT_04s0008g07260 | EnsemblPlantsGene:VIT_04s0008g07260 | EnsemblPlants:VIT_04s0008g07260.t01 |
| unigene:Vvi.1493 | RefSeq:XP_002262758 | RefSeq:XP_002262758.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4:-:7520562..7521694
Molecular Weight (calculated)
33391.4 Da
IEP (calculated)
8.869
GRAVY (calculated)
-0.352
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSKTTQNQS SGSGSVSKQS SDWREEAING GSLRHVDLHH GSNGWASPPG DLFSLRSKNY FTRKQKSPSG DWLLKPAGFD WLRSTSKLDN VLARPDNRVA
101: HALRKAQSLN RSQKAFIFAV NIQVPGREHH SAVFYFATED PIPPGSLFYR FIHGDDAFRN QRFKIVNRIV KGPWIVKAAV GNYAACLLGK ALTCSYHRGS
201: NYLEIDVDIG SSAIANAILR LALGYVTAVN IDMGFLVEAQ AEEELPEKLL GAVRVCQMEM SSATFVEASP SPENATGPVA AVSKRGLGLS KVNHHKSEDD
301: EDGNF
101: HALRKAQSLN RSQKAFIFAV NIQVPGREHH SAVFYFATED PIPPGSLFYR FIHGDDAFRN QRFKIVNRIV KGPWIVKAAV GNYAACLLGK ALTCSYHRGS
201: NYLEIDVDIG SSAIANAILR LALGYVTAVN IDMGFLVEAQ AEEELPEKLL GAVRVCQMEM SSATFVEASP SPENATGPVA AVSKRGLGLS KVNHHKSEDD
301: EDGNF
001: MSPSKQRHRS STGENKSKPV RSASSSAIPE WITESTNGGS LRRVDPDTGT DGWASPPGDV FSLRSDSYLS KKQKTPAGDY LLSPAGMDWL KSSTKLENAL
101: ARPDNRVAHA LRKAQSRGQS LKSFIFAVNL QIPGKDHHSA VFYFATEEPI PSGSLLHRFI NGDDAFRNQR FKIVNRIVKG PWVVKAAVGN YSACLLGKAL
201: TCNYHRGPNY FEIDVDISSS AIATAILRLA LGYVTSVTID MGFLAEAQTE EELPERLIGA VRVCQMEMSS AFVVDAPPPQ QLPSQPCRTL SSAKVNHDED
301: ED
101: ARPDNRVAHA LRKAQSRGQS LKSFIFAVNL QIPGKDHHSA VFYFATEEPI PSGSLLHRFI NGDDAFRNQR FKIVNRIVKG PWVVKAAVGN YSACLLGKAL
201: TCNYHRGPNY FEIDVDISSS AIATAILRLA LGYVTSVTID MGFLAEAQTE EELPERLIGA VRVCQMEMSS AFVVDAPPPQ QLPSQPCRTL SSAKVNHDED
301: ED
Arabidopsis Description
At5g10750 [Source:UniProtKB/TrEMBL;Acc:Q9LEW4]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.