Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014641_P001 | Maize | cytosol, extracellular, nucleus | 91.44 | 92.0 |
| TraesCS7B01G325500.1 | Wheat | cytosol | 77.98 | 79.19 |
| TraesCS7D01G417100.2 | Wheat | cytosol, mitochondrion, nucleus | 77.68 | 79.13 |
| TraesCS7A01G424300.1 | Wheat | cytosol | 77.37 | 79.06 |
| HORVU7Hr1G098100.1 | Barley | plastid | 77.68 | 71.75 |
| GSMUA_Achr7P15920_001 | Banana | cytosol | 59.63 | 59.45 |
| GSMUA_Achr5P04860_001 | Banana | plastid | 49.85 | 58.21 |
| GSMUA_Achr5P21900_001 | Banana | cytosol | 58.41 | 57.7 |
| PGSC0003DMT400067616 | Potato | cytosol | 51.07 | 57.59 |
| KRH52302 | Soybean | cytosol | 50.15 | 56.75 |
| VIT_04s0008g07260.t01 | Wine grape | cytosol, nucleus, plastid | 52.91 | 56.72 |
| Solyc08g068880.1.1 | Tomato | mitochondrion | 54.13 | 56.19 |
| PGSC0003DMT400038272 | Potato | mitochondrion | 53.82 | 55.87 |
| KRH61636 | Soybean | cytosol | 49.85 | 54.88 |
| CDX70368 | Canola | cytosol, mitochondrion, nucleus, plastid | 50.76 | 54.79 |
| Bra006077.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 50.76 | 54.79 |
| AT5G10750.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 50.46 | 54.64 |
| CDX78399 | Canola | nucleus, plastid | 50.46 | 54.46 |
| Solyc08g006590.1.1 | Tomato | cytosol | 44.65 | 52.52 |
| KRH15692 | Soybean | cytosol | 47.71 | 52.35 |
| Zm00001d019662_P001 | Maize | mitochondrion | 28.13 | 51.4 |
| Bra036529.1-P | Field mustard | cytosol | 39.45 | 45.26 |
| KRH05337 | Soybean | cytosol | 36.39 | 43.91 |
| Bra009809.1-P | Field mustard | cytosol | 35.47 | 41.13 |
| CDX88150 | Canola | cytosol | 35.17 | 40.78 |
| AT5G24990.1 | Thale cress | cytosol | 36.39 | 40.48 |
| AT5G25010.1 | Thale cress | cytosol | 35.17 | 40.21 |
| CDX80479 | Canola | cytoskeleton, cytosol, nucleus | 35.78 | 39.93 |
| Bra009807.1-P | Field mustard | cytosol | 35.78 | 39.93 |
| CDY05382 | Canola | cytosol | 32.42 | 39.41 |
| AT5G25020.1 | Thale cress | cytosol | 31.8 | 38.66 |
| CDX88148 | Canola | cytosol | 30.58 | 37.88 |
| CDX80480 | Canola | cytosol | 22.94 | 36.59 |
| Zm00001d032166_P003 | Maize | endoplasmic reticulum, plasma membrane | 29.97 | 26.42 |
| Zm00001d024605_P001 | Maize | mitochondrion | 33.95 | 25.58 |
| Zm00001d014442_P007 | Maize | cytosol, nucleus, plasma membrane, plastid | 31.5 | 14.23 |
| Zm00001d035973_P005 | Maize | nucleus, plastid | 29.97 | 13.1 |
| Zm00001d007093_P006 | Maize | nucleus | 29.36 | 12.05 |
| Zm00001d014928_P002 | Maize | cytosol, mitochondrion | 29.05 | 11.89 |
| Zm00001d054090_P008 | Maize | cytosol, plastid | 28.44 | 11.64 |
| Zm00001d032685_P001 | Maize | nucleus | 24.46 | 10.43 |
Protein Annotations
| EnsemblPlants:Zm00001d036506_P001 | EnsemblPlants:Zm00001d036506_T001 | EnsemblPlantsGene:Zm00001d036506 | InterPro:EDR2_C | PANTHER:PTHR12136 | PANTHER:PTHR12136:SF38 |
| PFAM:PF07059 | ProteinID:AQK81181.1 | SEG:seg | UniParc:UPI0004DE9D1D | UniProt:A0A1D6LNR8 | MapMan:35.1 |
Description
Lipid binding protein
Coordinates
chr6:+:90878266..90879517
Molecular Weight (calculated)
35389.2 Da
IEP (calculated)
9.945
GRAVY (calculated)
-0.278
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MCPTKPGRPA QAAAGSGEKS WREQAVAASS LRPVDLDRGT NGWASPPGDL FHLRARGYFS CGGGKRGKAP SAAEWLLRPA GVDWLRSHAR LDHVLARHDN
101: RVAAAFRRAR LRNDPTAHFL LAVNLQVPGR PDAYSAVFYF AAEAPIAPDS LLGRFVQGDD AYRNARFKIA NRIVNGPWLL RATVGNYAAC LLGRALTCRY
201: HRGVDYLEID VDIGSSAIAS AILHLALGAV TSVTIDMGFL VESQSEEELP ERLFGAVRIA RMEMGAARYV ELPPNEAMPE TVCSGRAGAG FRVSSGKVVN
301: HSRQQDRAGG KVGRSMSCPE RERGGER
101: RVAAAFRRAR LRNDPTAHFL LAVNLQVPGR PDAYSAVFYF AAEAPIAPDS LLGRFVQGDD AYRNARFKIA NRIVNGPWLL RATVGNYAAC LLGRALTCRY
201: HRGVDYLEID VDIGSSAIAS AILHLALGAV TSVTIDMGFL VESQSEEELP ERLFGAVRIA RMEMGAARYV ELPPNEAMPE TVCSGRAGAG FRVSSGKVVN
301: HSRQQDRAGG KVGRSMSCPE RERGGER
001: MSPSKQRHRS STGENKSKPV RSASSSAIPE WITESTNGGS LRRVDPDTGT DGWASPPGDV FSLRSDSYLS KKQKTPAGDY LLSPAGMDWL KSSTKLENAL
101: ARPDNRVAHA LRKAQSRGQS LKSFIFAVNL QIPGKDHHSA VFYFATEEPI PSGSLLHRFI NGDDAFRNQR FKIVNRIVKG PWVVKAAVGN YSACLLGKAL
201: TCNYHRGPNY FEIDVDISSS AIATAILRLA LGYVTSVTID MGFLAEAQTE EELPERLIGA VRVCQMEMSS AFVVDAPPPQ QLPSQPCRTL SSAKVNHDED
301: ED
101: ARPDNRVAHA LRKAQSRGQS LKSFIFAVNL QIPGKDHHSA VFYFATEEPI PSGSLLHRFI NGDDAFRNQR FKIVNRIVKG PWVVKAAVGN YSACLLGKAL
201: TCNYHRGPNY FEIDVDISSS AIATAILRLA LGYVTSVTID MGFLAEAQTE EELPERLIGA VRVCQMEMSS AFVVDAPPPQ QLPSQPCRTL SSAKVNHDED
301: ED
Arabidopsis Description
At5g10750 [Source:UniProtKB/TrEMBL;Acc:Q9LEW4]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.