Factsheet for PGSC0003DMT400067616

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006590.1.1	Tomato	cytosol	79.31	82.73
PGSC0003DMT400038272	Potato	mitochondrion	80.0	73.65
VIT_04s0008g07260.t01	Wine grape	cytosol, nucleus, plastid	66.21	62.95
KRH52302	Soybean	cytosol	61.38	61.59
Bra006077.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	62.07	59.41
CDX70368	Canola	cytosol, mitochondrion, nucleus, plastid	62.07	59.41
AT5G10750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	61.72	59.27
CDX78399	Canola	nucleus, plastid	61.72	59.08
KRH15692	Soybean	cytosol	60.69	59.06
KRH61636	Soybean	cytosol	60.34	58.92
GSMUA_Achr5P21900_001	Banana	cytosol	64.83	56.8
GSMUA_Achr7P15920_001	Banana	cytosol	62.76	55.49
GSMUA_Achr5P04860_001	Banana	plastid	53.45	55.36
Zm00001d014641_P001	Maize	cytosol, extracellular, nucleus	59.66	53.23
TraesCS7A01G424300.1	Wheat	cytosol	57.93	52.5
TraesCS7D01G417100.2	Wheat	cytosol, mitochondrion, nucleus	57.24	51.71
OQU76985	Sorghum	cytosol, extracellular, nucleus	57.93	51.69
TraesCS7B01G325500.1	Wheat	cytosol	57.24	51.55
KRH05337	Soybean	cytosol	47.93	51.29
Zm00001d036506_P001	Maize	extracellular, nucleus, plastid	57.59	51.07
AT5G24990.1	Thale cress	cytosol	48.62	47.96
Bra036529.1-P	Field mustard	cytosol	46.9	47.72
HORVU7Hr1G098100.1	Barley	plastid	57.59	47.18
AT5G25020.1	Thale cress	cytosol	43.45	46.84
Bra009809.1-P	Field mustard	cytosol	45.52	46.81
CDX80479	Canola	cytoskeleton, cytosol, nucleus	47.24	46.76
AT5G25010.1	Thale cress	cytosol	45.86	46.5
CDX88150	Canola	cytosol	45.17	46.45
Bra009807.1-P	Field mustard	cytosol	46.21	45.73
CDX80480	Canola	cytosol	32.07	45.37
CDX88148	Canola	cytosol	40.69	44.7
CDY05382	Canola	cytosol	40.69	43.87
PGSC0003DMT400042135	Potato	cytosol	38.97	35.76
PGSC0003DMT400047520	Potato	cytosol	37.59	15.27
PGSC0003DMT400062486	Potato	nucleus	32.41	12.84

Protein Annotations

EnsemblPlants:PGSC0003DMT400067616	EnsemblPlantsGene:PGSC0003DMG400026289	EntrezGene:102586638	InterPro:EDR2_C	PANTHER:PTHR12136	PANTHER:PTHR12136:SF38
PFAM:PF07059	PGSC:PGSC0003DMG400026289	RefSeq:XP_006357067.1	UniParc:UPI00029684C0	UniProt:M1CHK1	MapMan:35.1

Description

Lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026289]

Coordinates

chr8:+:2005775..2007033

Molecular Weight (calculated)

32322.4 Da

IEP (calculated)

8.128

GRAVY (calculated)

-0.396

Length

290 amino acids

Sequence
(BLAST)

001: MCSAQQKLSQ HCPKSGGRDW REEVITGGSL KCVDLNNGTN GWASPPGDNF NLRGPNYFTK KTKIPSGEWL LQPAGVDWLR SNSKLDHVLS RNDNRVMNAL
101: KKSHSQGEFL KTFIVAVNLQ IPGRDQHSAV FYFATEQNRP LEPGSLLYRF VHGDDSYRNS RFKIVNRMIK GPWIVKTAVG NYSACLLGKA LNCYYHKGPN
201: YLEIDVDIGS SAIATAILHL ALGYVTSVTI DMGFLVEAET AEELPEKLFG AVRICQMEMS SATFVETTPY KKLISNHNSS KVQAENNEDE

Best Arabidopsis Sequence Match ( AT5G10750.1 )
(BLAST)

001: MSPSKQRHRS STGENKSKPV RSASSSAIPE WITESTNGGS LRRVDPDTGT DGWASPPGDV FSLRSDSYLS KKQKTPAGDY LLSPAGMDWL KSSTKLENAL
101: ARPDNRVAHA LRKAQSRGQS LKSFIFAVNL QIPGKDHHSA VFYFATEEPI PSGSLLHRFI NGDDAFRNQR FKIVNRIVKG PWVVKAAVGN YSACLLGKAL
201: TCNYHRGPNY FEIDVDISSS AIATAILRLA LGYVTSVTID MGFLAEAQTE EELPERLIGA VRVCQMEMSS AFVVDAPPPQ QLPSQPCRTL SSAKVNHDED
301: ED

Arabidopsis Description

At5g10750 [Source:UniProtKB/TrEMBL;Acc:Q9LEW4]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.