Factsheet for PGSC0003DMT400047520

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g005410.2.1	Tomato	cytosol	96.78	97.46
KRG90499	Soybean	extracellular	7.98	78.08
KRH76356	Soybean	mitochondrion	75.63	74.28
VIT_02s0033g00080.t01	Wine grape	mitochondrion	73.81	74.23
KRH39650	Soybean	mitochondrion	75.21	73.97
Bra013371.1-P	Field mustard	mitochondrion	73.53	73.12
CDX78916	Canola	mitochondrion	73.53	73.12
VIT_02s0033g00160.t01	Wine grape	cytosol, extracellular	14.29	72.86
CDX99399	Canola	mitochondrion	73.25	72.84
CDY01578	Canola	mitochondrion	72.83	72.63
Bra017600.1-P	Field mustard	mitochondrion, nucleus	72.83	72.42
CDY13045	Canola	mitochondrion	72.83	72.42
CDY23114	Canola	mitochondrion	72.83	72.42
CDX98603	Canola	mitochondrion	72.69	72.28
AT4G19040.2	Thale cress	mitochondrion	73.11	72.2
AT5G45560.1	Thale cress	mitochondrion	72.69	72.18
GSMUA_Achr5P17990_001	Banana	mitochondrion	71.71	70.33
VIT_02s0033g00120.t01	Wine grape	cytosol	71.85	69.89
TraesCS7D01G523200.2	Wheat	plastid	69.33	68.28
EER94411	Sorghum	cytosol, nucleus, plastid	69.61	67.99
TraesCS7B01G458700.1	Wheat	cytosol, plastid	68.77	67.72
HORVU7Hr1G117780.12	Barley	plastid	69.05	66.35
GSMUA_Achr11P...	Banana	mitochondrion	69.89	65.83
TraesCS7A01G538600.2	Wheat	cytosol, plastid	69.47	65.78
VIT_15s0107g00410.t01	Wine grape	cytosol	49.16	63.24
Zm00001d014442_P007	Maize	cytosol, nucleus, plasma membrane, plastid	61.76	60.91
Os10t0455900-01	Rice	plasma membrane	24.23	54.92
Bra012558.1-P	Field mustard	cytosol	69.89	37.66
PGSC0003DMT400067616	Potato	cytosol	15.27	37.59
PGSC0003DMT400038272	Potato	mitochondrion	15.55	35.24
PGSC0003DMT400062486	Potato	nucleus	32.35	31.56
PGSC0003DMT400042135	Potato	cytosol	12.46	28.16

Protein Annotations

Gene3D:2.30.29.30	Gene3D:3.30.530.20	MapMan:35.1	ncoils:Coil	InterPro:EDR2_C	GO:GO:0003674
GO:GO:0005488	GO:GO:0008289	InterPro:IPR001849	InterPro:IPR002913	InterPro:IPR011993	InterPro:IPR023393
UniProt:M1BKX5	PFAM:PF01852	PFAM:PF07059	EnsemblPlantsGene:PGSC0003DMG400018467	PGSC:PGSC0003DMG400018467	EnsemblPlants:PGSC0003DMT400047520
InterPro:PH-like_dom_sf	InterPro:PH_domain	PFscan:PS50003	PFscan:PS50848	PANTHER:PTHR12136	PANTHER:PTHR12136:SF47
SMART:SM00233	SMART:SM00234	SUPFAM:SSF50729	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI000296889D	SEG:seg	:	:	:	:

Description

Lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018467]

Coordinates

chr8:+:3846301..3854648

Molecular Weight (calculated)

80526.8 Da

IEP (calculated)

6.303

GRAVY (calculated)

-0.389

Length

714 amino acids

Sequence
(BLAST)

001: MSKVVHEGWM VRYGRRKIGK SFLHMRYFVL ETKLLAYFKT KPQGNVSPIK TLEIDGNFRV EDRGLKTHHG QMVYVLSVYN MKEKHDQITM AAFNIQEALI
101: WKEKIESVID QHQESVGGSR TKFNDFKSGT ESTGRTTSDQ ESPFSAAEDE DESQQNVLRG TTIANAIAPP ESVVDWTKES ESDLANPKYR RLLYCQNGLR
201: IFEELLNVDL LPKGCSRAMK AVGVVEATCE EIFELVMSMD ATRFEWDCSF QYGSLVEEVD GHTAILYHRL RLDWFPSFIW PRDLCYVRYW RRNDDGSYVV
301: LFRSREHKNC NPLPGYVRAH IESGGFNISP LKPCNGRPRT QVQQLMQIDL KGWGVGFIAS FQQHCLFQML NSVAGLREYF SQTDERAAAP RIPVMVNMNP
401: PSISSKKSQK QSHHRTPSLD QIRAANRNAV SMLDEYSDED EDFQCTDQEV SSPGLENDTI KTALEEEPIE HIDMSTFSGN LRHDDSDNGR DCWTISDGNN
501: FRVRGKNFCS DKTKVSAGKS LMDLVAVDWF KDTKRMDHVA RHPGCAAQVA SEKGLFTLVI NLQVPGSTHY SMIFYFVMKK LIPGSLLQRF VDGDDEFRNS
601: RMKLIPSVPK GSWIVRQSVG SSPCLLGKAV DCNYIRGPKY LEIDVDVGSS TVANGVMGLV IGVITSLVVD MAFVVQGNTP DELPEPLIGA ARVCHIELSS
701: AVVPKLEPEP STTE

Best Arabidopsis Sequence Match ( AT4G19040.1 )
(BLAST)

001: MSKVVYEGWM VRYGRRKIGR SYIHMRYFVL EPRLLAYYKK KPQDYQVPIK TMLIDGNCRV EDRGLKTHHG HMVYVLSVYN KKEKSHRITM AAFNIQEALM
101: WKEKIESVID QHQESQVPNG QQYVSFEYKS GMDTGRTASS SDHESQFSAA EDEEDSRRSL MRRTTIGNGP PESVLDWTKE FDAELANQNS DNQAFSRKHW
201: RLLQCQNGLR IFEELLEVDY LPRSCSRAMK AVGVVEATCE EIFELLMSMD GTRYEWDCSF QFGSLVEEVD GHTAVLYHRL LLDWFPMIVW PRDLCYVRYW
301: RRNDDGSYVV LFRSREHENC GPQPGCVRAH LESGGYNISP LKPRNGRPRT QVQHLIQIDL KGWGAGYLPA FQQHCLLQML NSVAGLREWF SQTDERGVHT
401: RIPVMVNMAS SSLSLTKSGK SLHKSAFSLD QTNSVNRNSL LMDEDSDDDD EFQIAESEQE PETSKPETDV KRPEEEPAHN IDLSCFSGNL KRNENENARN
501: CWRISDGNNF KVRGKNFGQE KRKIPAGKHL MDLVAVDWFK DSKRIDHVAR RKGCAAQVAA EKGLFSMVVN VQVPGSTHYS MVFYFVMKEL VPGSLLQRFV
601: DGDDEFRNSR LKLIPLVPKG SWIVRQSVGS TPCLLGKAVD CNYIRGPTYL EIDVDIGSST VANGVLGLVI GVITSLVVEM AFLVQANTAE EQPERLIGAV
701: RVSHIELSSA IVPNLESE

Arabidopsis Description

EDR2ENHANCED DISEASE RESISTANCE 2 [Source:TAIR;Acc:AT4G19040]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.