Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036529.1-P | Field mustard | cytosol | 75.84 | 71.58 |
| CDX88148 | Canola | cytosol | 67.66 | 68.94 |
| CDX80480 | Canola | cytosol | 50.56 | 66.34 |
| AT5G25020.1 | Thale cress | cytosol | 65.43 | 65.43 |
| CDX80479 | Canola | cytoskeleton, cytosol, nucleus | 68.77 | 63.14 |
| CDX88150 | Canola | cytosol | 65.43 | 62.41 |
| AT5G25010.1 | Thale cress | cytosol | 63.94 | 60.14 |
| AT5G24990.1 | Thale cress | cytosol | 63.57 | 58.16 |
| CDX70368 | Canola | cytosol, mitochondrion, nucleus, plastid | 58.36 | 51.82 |
| CDX78399 | Canola | nucleus, plastid | 57.99 | 51.49 |
| KRH52302 | Soybean | cytosol | 53.16 | 49.48 |
| KRH61636 | Soybean | cytosol | 52.79 | 47.81 |
| VIT_04s0008g07260.t01 | Wine grape | cytosol, nucleus, plastid | 53.9 | 47.54 |
| KRH15692 | Soybean | cytosol | 52.04 | 46.98 |
| PGSC0003DMT400067616 | Potato | cytosol | 43.87 | 40.69 |
| KRH05337 | Soybean | cytosol | 39.41 | 39.11 |
| GSMUA_Achr5P21900_001 | Banana | cytosol | 46.47 | 37.76 |
| GSMUA_Achr5P04860_001 | Banana | plastid | 39.03 | 37.5 |
| GSMUA_Achr7P15920_001 | Banana | cytosol | 45.72 | 37.5 |
| PGSC0003DMT400038272 | Potato | mitochondrion | 43.49 | 37.14 |
| Solyc08g068880.1.1 | Tomato | mitochondrion | 43.12 | 36.83 |
| Solyc08g006590.1.1 | Tomato | cytosol | 37.55 | 36.33 |
| Zm00001d014641_P001 | Maize | cytosol, extracellular, nucleus | 41.64 | 34.46 |
| TraesCS7A01G424300.1 | Wheat | cytosol | 40.89 | 34.38 |
| TraesCS7D01G417100.2 | Wheat | cytosol, mitochondrion, nucleus | 40.89 | 34.27 |
| TraesCS7B01G325500.1 | Wheat | cytosol | 40.89 | 34.16 |
| OQU76985 | Sorghum | cytosol, extracellular, nucleus | 40.52 | 33.54 |
| Zm00001d036506_P001 | Maize | extracellular, nucleus, plastid | 39.41 | 32.42 |
| HORVU7Hr1G098100.1 | Barley | plastid | 41.64 | 31.64 |
| CDY41767 | Canola | extracellular, golgi | 10.78 | 30.53 |
| CDY47711 | Canola | cytosol | 31.6 | 27.6 |
| CDY64695 | Canola | cytosol, golgi, nucleus | 23.42 | 19.81 |
| CDY10168 | Canola | nucleus | 31.97 | 15.25 |
| CDY13045 | Canola | mitochondrion | 33.46 | 12.53 |
| CDX78916 | Canola | mitochondrion | 33.09 | 12.4 |
| CDY23114 | Canola | mitochondrion | 33.09 | 12.4 |
| CDY01578 | Canola | mitochondrion | 32.71 | 12.29 |
| CDX98603 | Canola | mitochondrion | 32.71 | 12.26 |
| CDX99399 | Canola | mitochondrion | 32.71 | 12.26 |
| CDY58454 | Canola | cytosol | 32.34 | 11.36 |
| CDY41766 | Canola | nucleus | 32.71 | 11.22 |
| CDY04553 | Canola | cytosol | 29.37 | 10.81 |
| CDX67608 | Canola | cytosol | 29.0 | 10.8 |
| CDX71361 | Canola | cytosol | 29.37 | 10.78 |
| CDY07523 | Canola | cytosol | 28.62 | 10.66 |
| CDX78263 | Canola | cytosol | 27.14 | 10.11 |
| CDX73448 | Canola | cytosol | 26.77 | 9.97 |
| CDY02892 | Canola | cytosol | 26.39 | 9.79 |
| CDY69875 | Canola | cytosol | 2.97 | 1.73 |
| CDX98605 | Canola | cytosol | 0.37 | 0.22 |
| CDY47710 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY05382 | EnsemblPlantsGene:GSBRNA2T00120267001 | InterPro:EDR2_C | ncoils:Coil | PANTHER:PTHR12136 | PANTHER:PTHR12136:SF88 |
| PFAM:PF07059 | ProteinID:CDY05382 | ProteinID:CDY05382.1 | UniParc:UPI0004EE6A50 | MapMan:35.1 | : |
Description
BnaC02g40900D
Coordinates
chrLK031961:+:810086..810982
Molecular Weight (calculated)
29182.6 Da
IEP (calculated)
6.954
GRAVY (calculated)
-0.188
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQTESSAGT NNTKLAVTGS TSAVPEWTTE TINGGSFRQV DLHIGTNGWA SPPGNVFSLR SSNYFTNKQK SPGGDYLLSP AGVDWLKSTT KLDNIMSRPD
101: NRVAHALREA QSQNSFIFAV NFEVSGKEHY HMVFKLVSQV VKGPWVVKAA AGQFGAFLVG KTVKCNYHKG SNYFEVDVDT GSSAIMSAVV RLLLGYTKSF
201: VVDVGLVIEA QTEDELPERL IGAVRLCHMD LSSAFVVGEQ TLEPCGMLGS VEASHPRRGH ELNVNKEPI
101: NRVAHALREA QSQNSFIFAV NFEVSGKEHY HMVFKLVSQV VKGPWVVKAA AGQFGAFLVG KTVKCNYHKG SNYFEVDVDT GSSAIMSAVV RLLLGYTKSF
201: VVDVGLVIEA QTEDELPERL IGAVRLCHMD LSSAFVVGEQ TLEPCGMLGS VEASHPRRGH ELNVNKEPI
001: MNQTETTTDD DNNNSKPAET ESTTTAPEWI TETINGGSFC HVDLETGTNG WASPPGNVFS LRSNNYFTPT KQKSPGGDYL LSLAAVDWLK STTKKLDHIL
101: SRPDNRVIHA LKTSQSSSFI FAVNFQVPGK EHYNLRFKIV SNVVKGPWVV KAAAGKFGAF VAGKAMKCSY HRGDNYFEVD VDISSSAIMT ALIRFMLGYV
201: TYLMVDIGFV VEAQTEEELP ERLIGGARIC HMELSSAFVI YDDVDGKKSS QQRRRMMGAA EGNHSEDED
101: SRPDNRVIHA LKTSQSSSFI FAVNFQVPGK EHYNLRFKIV SNVVKGPWVV KAAAGKFGAF VAGKAMKCSY HRGDNYFEVD VDISSSAIMT ALIRFMLGYV
201: TYLMVDIGFV VEAQTEEELP ERLIGGARIC HMELSSAFVI YDDVDGKKSS QQRRRMMGAA EGNHSEDED
Arabidopsis Description
Protein of unknown function (DUF1336) [Source:TAIR;Acc:AT5G25020]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.